PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23188
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 382aa    MW: 42676 Da    PI: 4.4786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23188genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11194238554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h ++Er+RR+++ ++f  L  l+P +     kK++Ka+iL  +++Y+k+L
  Tp57577_TGAC_v2_mRNA23188 194 HIMAERKRRENLSKSFIALAALVPGL-----KKMDKASILADTIKYLKEL 238
                                899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.059189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-13194243No hitNo description
SMARTSM003532.9E-13195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEINNTPMN VAADSNWLSD LEMVDEYILF DEDCNLNLLD ANQEQFLSHD IASAFEEQRQ  60
TLQQCLTTEF ISTTMSKIFT DETSFESFDD FDFEKLAKEL KTIDQSNNAE NFSPQFSAST  120
PSIQSPQILS FDNPNPTEFY SFDQTQNEMV TSLSLPELGN IQFSTQISKA SSKNQNLETK  180
TSQSKRPRAH GLDHIMAERK RRENLSKSFI ALAALVPGLK KMDKASILAD TIKYLKELKE  240
RLAVLEEPGK KTNEDQSMVV TTKPDVCSDQ HYSSSHENTE TESAADGIAT GQSLFKVEAK  300
VKGKDMLIRI HCQKYDGLLV KIITEIQSYQ LSVVNNSVLA FGDSILDITI IAEVKIGEGY  360
NLSIKGLVKH LSIAALEFMS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442262.21e-149transcription factor bHLH19
RefseqXP_013457519.11e-149transcription factor bHLH19
TrEMBLA0A072V0A31e-148A0A072V0A3_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES908061e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-40bHLH family protein