PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2318
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 288aa    MW: 32840.4 Da    PI: 4.4421
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2318genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.2e-2068121356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t+eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Tp57577_TGAC_v2_mRNA2318  68 KKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 121
                               56789************************************************9 PP
2HD-ZIP_I/II134.82.9e-4367158192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl++eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l +  +++ ke+e
  Tp57577_TGAC_v2_mRNA2318  67 EKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIIKENE 151
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +L++e+ 
  Tp57577_TGAC_v2_mRNA2318 152 KLKSEVV 158
                               ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-2057125IPR009057Homeodomain-like
PROSITE profilePS5007118.59363123IPR001356Homeobox domain
SMARTSM003894.4E-2066127IPR001356Homeobox domain
PfamPF000466.0E-1868121IPR001356Homeobox domain
CDDcd000861.79E-1968124No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2269130IPR009057Homeodomain-like
PRINTSPR000314.4E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000314.4E-6103119IPR000047Helix-turn-helix motif
PfamPF021832.3E-18123165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESGRLYFDS SSCRGNNNMN MLFLGNADLG FRGRSMMSME EGSKRRPFFS SPDELYDEEY  60
YEEQSPEKKR RLTSEQVHLL EKSFEEENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW  120
KTKQLERDYD VLKSSYDSLL STYDSIIKEN EKLKSEVVSL NEKLQVPAKD MPEEPLLSEK  180
KADPLQVDIA QIFSIKVDDH MSSGSVGSAV VDEGSPHVVV DSVDSYFPAD NYGGCVAPIE  240
RVQSEEDDGS DDGRCYFDVF VASETTEQQN HEGGEGLNWW GNMYYVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450824.21e-176LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5
SwissprotQ022834e-98HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2K3NPT10.0A0A2K3NPT1_TRIPR; Homeobox-leucine zipper protein HAT5-like
STRINGXP_004489298.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-86homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]