PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23142

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 270aa MW: 30565.9 Da PI: 9.272

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23142	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.2e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv a+e LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Tp57577_TGAC_v2_mRNA23142 19 PRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-31	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.35	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.58E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGSCGREGVV RQYVRSKVPR LRWTPELHRC FVYAIETLGG HQKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRGDSCKQ DRTTSVHKRP SFQEHDDGFG DDQSIGKESD SLFSNTNFSP 120 KRARIEKKSS FSGMIQCRER ICEAVPNPYT TFYDYVQDMV QQQQKGIKEI CVASQYSTIF 180 PMLPKQETHL LQVTKLNEKK HVNGKIKSVR AEDEVIKSCE LSLSISLPHL SPQRSNVSSA 240 NDMRDSGFCN FMGCSNVQNR INLDLSLAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23142

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-38	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013442314.1	1e-167	protein PHR1-LIKE 3
TrEMBL	A0A072TFN8	1e-165	A0A072TFN8_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRING	XP_004498202.1	1e-162	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23142