PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22774
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 163aa    MW: 19367.9 Da    PI: 9.7651
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22774genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.19.3e-13950243
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                               +i  ++ r+ t+ kR +g++KK +E+ +LC+++++ i+f ++
  Tp57577_TGAC_v2_mRNA22774  9 FITRDTARKATYKKRVKGLMKKLNEITTLCEIKACAIVFNPE 50
                               688899********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002664.90E-21184No hitNo description
SMARTSM004324.2E-14159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.993148IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-6222IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-19393IPR002100Transcription factor, MADS-box
PfamPF003191.6E-13950IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-62237IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-63758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGKKVKLAFI TRDTARKATY KKRVKGLMKK LNEITTLCEI KACAIVFNPE DLEPQIWPSI  60
QGVQSVLTQF LHVPEFVRHR KMLNHESYLK EKTQKLNEKL KKQMKENREM KMILQMYHYL  120
EKWNIPEDLS IVDHNDLTCV IDEKMKEINM KMMEMDINDQ RV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11530RKATYKKRVKGLMKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22774
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616031.14e-78agamous-like MADS-box protein AGL80
TrEMBLA0A2K3NAD39e-90A0A2K3NAD3_TRIPR; Agamous-like mads-box protein agl80-like
STRINGAES989892e-77(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-34AGAMOUS-like 80