PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 146aa MW: 16919.8 Da PI: 4.5784 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 16 | 40 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia+ ++ gR+++++k++w+++l Tp57577_TGAC_v2_mRNA22405 16 RWSLIAESLP-GRSDNEIKNYWHSHL 40 6*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.382 | 1 | 44 | IPR017930 | Myb domain |
CDD | cd00167 | 7.78E-6 | 9 | 40 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-12 | 15 | 41 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-8 | 15 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-7 | 15 | 40 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
LLIFTTLCDK LLICDRWSLI AESLPGRSDN EIKNYWHSHL KKISRHNETN LIKEIQKTKT 60 TSEDVSDDSH HILESSTSMS SSHVELNMNL YRKEDSVASW EIWDGFSNNF WTEPFISENA 120 LCQDYSPVSW YGSEAEDPFF TWIPI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22405 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443533.1 | 1e-51 | transcription factor MYB8 | ||||
TrEMBL | A0A072TL12 | 3e-50 | A0A072TL12_MEDTR; Myb transcription factor | ||||
STRING | XP_004507244.1 | 6e-46 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 6e-11 | myb domain protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22405 |