PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22327
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 334aa    MW: 37857.5 Da    PI: 8.1452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22327genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-10162209455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA22327 162 SHSLAERVRREKISERMKKLQQLVPGC----DKVTGKALMLDEIINYVQSLQ 209
                                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.07E-11156213No hitNo description
SuperFamilySSF474593.14E-17156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.961158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17158222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAAFSYQYHP FLVDSSFMLN MNTCSSPPSS QFHPLHQDII NCVDQQSSKV TTIMSDNEPS  60
SVTKNLSPQS SMVLDKLETG DEQVTQKVSP MEKKRRTRNN GPSSTKQQSH DNNLVEGRNK  120
KQKKNKEEEK PKGEKKDQRK CLDEPPTGYI HVRARRGQAT DSHSLAERVR REKISERMKK  180
LQQLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLT SVNPMFYDMA TDLDTFLIKP  240
EKLNNLASPS PQLSSVSHCN SPKQGTNFGD MSTPTNIFQT TNDYLLDTST SIFLQGQRTN  300
ILSEDGSHFW EVEEQRQKFL NSHGFNNNLC SFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1375310.0BT137531.1 Medicago truncatula clone JCVI-FLMt-15H6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461663.10.0transcription factor bHLH137
SwissprotQ93W882e-61BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A072V2W20.0A0A072V2W2_MEDTR; Putative transcription factor bHLH family
STRINGXP_007137888.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]