PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22058
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 520aa    MW: 58955.6 Da    PI: 4.4276
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22058genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.95.7e-331585188374
                       GRAS   8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                                  ea+++g+++la+  L+ +s+ ++p gd+++ la+y+    ++ +++++    + l+ +++     ++  +++k++++   + 
  Tp57577_TGAC_v2_mRNA22058 158 HGEALEKGQKALAEVNLKCISQKVTPMGDSLETLAFYL----SQEVTNHG----EYLKGEAQ-----KNFDSSFKALYQGNLVG 228
                                568999*******************************6....55666621....22333333.....455567889999999** PP

                       GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAe 170
                                k++h++a +aIlea+  e  +++HiiDf+i++G+QWp+Ll+a ++      +l++T ++s++ +      + e t++ L ++A+
  Tp57577_TGAC_v2_mRNA22058 229 KVAHFAAISAILEAAMLEdsDEIHIIDFSIGNGVQWPSLLEAVSKM---NKRLKLTSIKSSHDEnseCIWNFEDTKRELCEYAK 309
                                *************97655559**********************986...457******99666665566789************ PP

                       GRAS 171 elgvpfefnvlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLk....lvkslsPk.vvvvveq 244
                                ++g+++  +    k le+l ++e+++ +     +  la nl+  l ++   +   ++   e+Lk    l+k+  +k ++++ + 
  Tp57577_TGAC_v2_mRNA22058 310 SCGLKLMVEE---KGLEEL-VSEIKIMNkrgarKVFLAFNLMTGLPHMGMVRNRRKN-ALEFLKvaedLIKNCGSKgMITFGDG 388
                                ****998776...788888.7888877765555667788888888877755555555.66777722223555666635678888 PP

                       GRAS 245 e..adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                +   ++ ns +F   f   l +y al++s+e++++++  ++ri  E  ++++ i+++   ++ e   ++++ +  ++      +
  Tp57577_TGAC_v2_mRNA22058 389 DvfEKLkNSLNFKSFFEGNLVHYKALLESIESQFSEKFsKARIACEVLFVAPCISSCDWLQTWE---EMKSDGDFHAE---ISL 466
                                8533447999********************9999888559999999999999999876666665...66666666655...568 PP

                       GRAS 325 kpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                ++ +ls+++ +++k +lr ++ s   r+e  ++++lv  Wk+ +L+ +S W+
  Tp57577_TGAC_v2_mRNA22058 467 ESRSLSKNVLMEVKEVLRGCEsSYQARIEgGNENELVVEWKGTQLLRFSIWK 518
                                9********************5555666666799*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.043125496IPR005202Transcription factor GRAS
PfamPF035142.0E-30158518IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVHLGHYDPY GIIMDDHVDD YGSYGMIMDD DHVDVDYVPY GIIMDDHVDD YEFNTLLSTS  60
ENSNLSEISM FTNDHVQFPI DESEILELSS LMELESFDSI SCPQIVDIHE YEYQEESEGS  120
FPSQNFPYFS SIQQSLILPQ QNMEIENQVS LPHLMEAHGE ALEKGQKALA EVNLKCISQK  180
VTPMGDSLET LAFYLSQEVT NHGEYLKGEA QKNFDSSFKA LYQGNLVGKV AHFAAISAIL  240
EAAMLEDSDE IHIIDFSIGN GVQWPSLLEA VSKMNKRLKL TSIKSSHDEN SECIWNFEDT  300
KRELCEYAKS CGLKLMVEEK GLEELVSEIK IMNKRGARKV FLAFNLMTGL PHMGMVRNRR  360
KNALEFLKVA EDLIKNCGSK GMITFGDGDV FEKLKNSLNF KSFFEGNLVH YKALLESIES  420
QFSEKFSKAR IACEVLFVAP CISSCDWLQT WEEMKSDGDF HAEISLESRS LSKNVLMEVK  480
EVLRGCESSY QARIEGGNEN ELVVEWKGTQ LLRFSIWKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465540.0AC146554.5 Medicago truncatula clone mth2-9l7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623338.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2K3MPL20.0A0A2K3MPL2_TRIPR; Nodulation-signaling pathway 2 protein
STRINGAES795560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.17e-13GRAS family protein