PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22010
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 274aa    MW: 31294.1 Da    PI: 6.6429
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.4e-1830121286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                                Wt+qe+  Li+a++e++ +l+rg l++ +Weev+ ++           ++++ qC++k+e+l++r++ +k++     ++ ss++
  Tp57577_TGAC_v2_mRNA22010  30 WTHQETINLIRAYQEKWYSLKRGPLRGSQWEEVAVVVaarcgyDYNHPSKTALQCRHKMEKLRQRHRSEKHRLTATsSAVSSRS 113
                                *************************************8666654445589************************9945677889 PP

                   trihelix  79 cpyfdqle 86 
                                ++yf+ ++
  Tp57577_TGAC_v2_mRNA22010 114 WQYFRLMD 121
                                *****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-1729123No hitNo description
PROSITE profilePS500906.0632992IPR017877Myb-like domain
SMARTSM005959.8E-437128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAATTPSSSS PPKPTLTLSS LTKKPQPIPW THQETINLIR AYQEKWYSLK RGPLRGSQWE  60
EVAVVVAARC GYDYNHPSKT ALQCRHKMEK LRQRHRSEKH RLTATSSAVS SRSWQYFRLM  120
DDLERGPLPI SARPVLHNFP VSDEDSDGGE RGKKPSVRSR SLKHSVRSRS MNNILNQKPA  180
FTNEIDDGGD DDDDDEEEED DDEEEDEGVT MMKGLTAELR GFAERIVGLE NMKIEMMKET  240
ERFRLEMENK RIRMILESQW RIVDSIGKAF GSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541931e-108CR954193.3 Medicago truncatula chromosome 5 clone mth2-27a1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611755.11e-130uncharacterized protein LOC11405483
TrEMBLA0A2K3PDP21e-169A0A2K3PDP2_TRIPR; Uncharacterized protein
STRINGAES947131e-130(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-38Trihelix family protein