PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 185aa MW: 22051.6 Da PI: 7.6175 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 32 | 76 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ + eE+ l++++ +q+G++ W++Iar+++ gRt++++k++w+++l Tp57577_TGAC_v2_mRNA21726 32 GPYSVEEERLIIQLQQQWGNK-WSKIARRLP-GRTDNEIKNYWRTHL 76 78999****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.413 | 1 | 25 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 8 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-23 | 11 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.005 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-11 | 33 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 39 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MWPKSQLHCL RRSGKSCRLR WLNYLRPNLK HGPYSVEEER LIIQLQQQWG NKWSKIARRL 60 PGRTDNEIKN YWRTHLQKRV QVEQEGEFMN KVESVAHDFN KKNIDVVSNS EGETKESSVD 120 SFPLSDWGMG NSPYENRIFD WIVELQNGYS DKEKELGRDR KSTHEYNPQQ EYDTWDYSGI 180 LWDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-17 | 2 | 80 | 27 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-17 | 2 | 80 | 27 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-17 | 2 | 80 | 27 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21726 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468124.2 | 1e-98 | transcription factor MYB27 | ||||
Swissprot | Q9SCP1 | 7e-42 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A396JN59 | 2e-97 | A0A396JN59_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | GLYMA10G06680.1 | 7e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 2e-40 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21726 |
Publications ? help Back to Top | |||
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