PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2142

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 723aa MW: 82159.5 Da PI: 7.6706

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2142	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.6	6.6e-21	105	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + Tp57577_TGAC_v2_mRNA2142 105 EFYSDFAKSCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKSTNETKPQRNRKSSRCGCQAYMRISKTTefgPPEWRVTGF 189 6************9998877356667999*************9******************99777789** PP FAR1 82 eleHnHela 90 ++HnHel Tp57577_TGAC_v2_mRNA2142 190 GNHHNHELL 198 *****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-17	105	198	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-19	321	412	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.285	596	632	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-6	604	630	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.7E-5	607	634	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
LVCLSSLATK TSPPPPSATV HHRPSLISPT DLSLADNCSP YIMSEEVGSM LAVYDDPSDQ 60 HSLSFGGDTS STEESPGETR LSLQPTNDHI PYIGQRFSTH DEAYEFYSDF AKSCGFSIRR 120 HRTEGKDGVG KGLTRRYFVC HRAGNTPAKS TNETKPQRNR KSSRCGCQAY MRISKTTEFG 180 PPEWRVTGFG NHHNHELLEP NQVRFLPAYR TISDVDKNRI LMFAKTGISV HQMMRLMELE 240 KCVEPGYLPF TEKDVRNLLQ SFRKLDPEEE SLDLLRMCRN IKERDPNFKF EYTLDANNRL 300 ENIAWSYASS IQLYDIFGDA VVFDTTHRLT AFDMPLGIWV GINNYGMPCF FGCVLLRDET 360 VRSYSWAIKA FLGFMNGKAP QTILTDQNSC LKDALSAEMS ITKHALCIWM IVAKFPSWFN 420 AVVGERYNEW KAEFYRLYNL ESVEDFELGW REMVCSFGLH TNRHIVNLYS LRSLWALPYL 480 RSHFLAGMTT TGLSKSINAF IQRFLSAQTR LAHFVEQVAV AVDFKDQTGE QQTMQQNLQN 540 VCLKTGAPME SHAATVLTPF AFSKLQEELV LAAHYASFSV EDGFLVRHHT KVEGGRKVYW 600 SPHEGIISCS CHQFEFSGIL CRHTLRVLST GNCFQIPDTY LPIRWRRISV PSSKLVHNAP 660 NDHAERVKLF QNMVSSLITE SAKSKERLDT ATEQVSILLS RIREQPISLQ CARDISTINR 720 NL*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

LVCLSSLATK TSPPPPSATV HHRPSLISPT DLSLADNCSP YIMSEEVGSM LAVYDDPSDQ  60
HSLSFGGDTS STEESPGETR LSLQPTNDHI PYIGQRFSTH DEAYEFYSDF AKSCGFSIRR  120
HRTEGKDGVG KGLTRRYFVC HRAGNTPAKS TNETKPQRNR KSSRCGCQAY MRISKTTEFG  180
PPEWRVTGFG NHHNHELLEP NQVRFLPAYR TISDVDKNRI LMFAKTGISV HQMMRLMELE  240
KCVEPGYLPF TEKDVRNLLQ SFRKLDPEEE SLDLLRMCRN IKERDPNFKF EYTLDANNRL  300
ENIAWSYASS IQLYDIFGDA VVFDTTHRLT AFDMPLGIWV GINNYGMPCF FGCVLLRDET  360
VRSYSWAIKA FLGFMNGKAP QTILTDQNSC LKDALSAEMS ITKHALCIWM IVAKFPSWFN  420
AVVGERYNEW KAEFYRLYNL ESVEDFELGW REMVCSFGLH TNRHIVNLYS LRSLWALPYL  480
RSHFLAGMTT TGLSKSINAF IQRFLSAQTR LAHFVEQVAV AVDFKDQTGE QQTMQQNLQN  540
VCLKTGAPME SHAATVLTPF AFSKLQEELV LAAHYASFSV EDGFLVRHHT KVEGGRKVYW  600
SPHEGIISCS CHQFEFSGIL CRHTLRVLST GNCFQIPDTY LPIRWRRISV PSSKLVHNAP  660
NDHAERVKLF QNMVSSLITE SAKSKERLDT ATEQVSILLS RIREQPISLQ CARDISTINR  720
NL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2142

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC140549	0.0	AC140549.12 Medicago truncatula clone mth2-28o14, complete sequence.
GenBank	AC140551	0.0	AC140551.8 Medicago truncatula clone mth2-80i8, complete sequence.
GenBank	AC148097	0.0	AC148097.7 Medicago truncatula clone mth2-15a20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485421.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_004485422.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S2XBK3	0.0	A0A1S2XBK3_CICAR; protein FAR1-RELATED SEQUENCE 11
STRING	XP_004485421.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2142

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]