PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21411
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 138aa    MW: 15924.4 Da    PI: 9.5595
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21411genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-131778148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48
                               +g+WT eEd +l+++++ +G g W++ a+                 ++Rt+k+c++rw++yl
  Tp57577_TGAC_v2_mRNA21411 17 KGPWTMEEDMILINYIANHGEGVWNSLAKSAAiilnnnnmilyitgLKRTGKSCRLRWLNYL 78
                               79********************999999999999999999999999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-221081IPR009057Homeodomain-like
PROSITE profilePS5129417.7611282IPR017930Myb domain
SMARTSM007172.1E-91680IPR001005SANT/Myb domain
PfamPF002494.4E-131778IPR001005SANT/Myb domain
SuperFamilySSF466898.67E-1918105IPR009057Homeodomain-like
CDDcd001672.27E-81978No hitNo description
Gene3DG3DSA:1.10.10.605.2E-882105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDKKECNSSH QDPDVRKGPW TMEEDMILIN YIANHGEGVW NSLAKSAAII LNNNNMILYI  60
TGLKRTGKSC RLRWLNYLRP DVRRGNITPE EQLLIIELHA KWGNRSIYKT YILNIYQSQI  120
FSYSNGVCFA ALYKIKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-141210522100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448224.16e-55myb-related protein 305
SwissprotP813913e-52MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A072TYI71e-53A0A072TYI7_MEDTR; Myb transcription factor
STRINGGLYMA05G08690.16e-54(Glycine max)
STRINGXP_004304632.15e-54(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.15e-50myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]