PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA21233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19827.3 Da PI: 9.8708 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39 | 1.1e-12 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i ++ r+ t+ kR +g++KK +E+ +LC+++++ i+f + Tp57577_TGAC_v2_mRNA21233 10 FITKDTTRKATYKKRVKGLMKKLNEITTLCEIKACAIVFNP 50 78999*********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.647 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.63E-20 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-19 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-13 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGGKKVKLAF ITKDTTRKAT YKKRVKGLMK KLNEITTLCE IKACAIVFNP EILEPQIWPS 60 IEGVQSVVNQ FIHVPKFDRG RKMLNHESYL KEKIEKLSEK LTKKTKENRK MKMTIQMYHF 120 LEKGNIEGLS TVDHDDLTYV IDEKMEEINM KMMEMEINDQ RAPRFVNDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 31 | RKATYKKRVKGLMKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA21233 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616031.1 | 1e-75 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3NAD3 | 1e-119 | A0A2K3NAD3_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | AES98989 | 4e-75 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-25 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA21233 |