PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2122

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 467aa MW: 49727.8 Da PI: 7.0957

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2122	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.3	1.1e-41	123	231	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s Tp57577_TGAC_v2_mRNA2122 123 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLS 207 5699****************************************************************99988888888888444 PP TCP 87 sg.....................k 89 ++ + Tp57577_TGAC_v2_mRNA2122 208 APpsksaphsfhsalalahhpyeE 231 444444444444444444444321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-39	127	270	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	128	182	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MELSSDLQQN NNKKQQKRGT TTHPHHQQQE SLSPPPSNSH SQQHQQHHLV VPFDGRPSPF 60 IMGSISTNNT NSSPSNSSSS SASASAIDAS LAIATRSEPH SNNNNQIQQF SSSTTTAVAV 120 ANPPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII 180 AATGTGTIPA NFSTLNVSLR SSGSTLSAPP SKSAPHSFHS ALALAHHPYE EAAYQHAPLL 240 GFHPHQQLMN ADQIGEALSN ENYMRKRYRE DLFKDDNNNQ NNETGDADGS SSPKGFKXXX 300 XXXXXXXXXX XXXXNNETGD GDGSSSPKGF KTNHQQDGTM GEQGEGGGGG ASSSSSSASS 360 AGNSISGLLR PPSNMLPATA MWATAGSGNT IWMVPVTGGG GATANSETVQ TQNMWPFSTH 420 LNNQQSSQQQ GTPSSQLHFM PRFNVPTGNS GGSDGVEFEA YWIGSV*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MELSSDLQQN NNKKQQKRGT TTHPHHQQQE SLSPPPSNSH SQQHQQHHLV VPFDGRPSPF  60
IMGSISTNNT NSSPSNSSSS SASASAIDAS LAIATRSEPH SNNNNQIQQF SSSTTTAVAV  120
ANPPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII  180
AATGTGTIPA NFSTLNVSLR SSGSTLSAPP SKSAPHSFHS ALALAHHPYE EAAYQHAPLL  240
GFHPHQQLMN ADQIGEALSN ENYMRKRYRE DLFKDDNNNQ NNETGDADGS SSPKGFKXXX  300
XXXXXXXXXX XXXXNNETGD GDGSSSPKGF KTNHQQDGTM GEQGEGGGGG ASSSSSSASS  360
AGNSISGLLR PPSNMLPATA MWATAGSGNT IWMVPVTGGG GATANSETVQ TQNMWPFSTH  420
LNNQQSSQQQ GTPSSQLHFM PRFNVPTGNS GGSDGVEFEA YWIGSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2122

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462384.1	1e-180	transcription factor TCP8 isoform X2
Refseq	XP_024632177.1	1e-180	transcription factor TCP8 isoform X2
TrEMBL	A0A2K3LW45	0.0	A0A2K3LW45_TRIPR; Uncharacterized protein
STRING	AES63214	1e-179	(Medicago truncatula)
STRING	AES63253	1e-179	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-56	TCP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2122