PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20972
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 684aa    MW: 79880.1 Da    PI: 9.0376
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20972genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-09489533148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                r +WT++E e + +  +q+G++ W++Ia  +g  +++ q+k+ w+ ++
  Tp57577_TGAC_v2_mRNA20972 489 RCKWTPDELEFIRKSYEQHGPD-WRLIADALG--KSRDQVKDLWRRLK 533
                                679*****************88.********8..8*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-4415479IPR009057Homeodomain-like
SMARTSM007176.6E-4415486IPR001005SANT/Myb domain
SuperFamilySSF466897.72E-11463546IPR009057Homeodomain-like
PROSITE profilePS5129414.202484537IPR017930Myb domain
SMARTSM007176.1E-8488535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-9491551IPR009057Homeodomain-like
CDDcd001671.03E-4491533No hitNo description
PfamPF139216.6E-11492550No hitNo description
PROSITE profilePS500905.866534656IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
METLSKKNKR TEDKESETNG GDSHMSESNA VDDLPLAKSN DYQHLVESNK SEDGKQGKKK  60
NKKKKTSEES KDKEYKELKS NECEDDNQGK KIKKKQMLIE GNTPKECNDF RSNVDEDGKQ  120
DKKVKKKKKK LSEECIHKEF ESNECEDDNQ GKMKKKQKLI EGNTLKEGND FRNNGDEDGK  180
QDKKMKKKKK LNEESNHTEY NERNSNECED DNQGKKMKKK QKLIEGNFGS NGGEDGEQDK  240
KMKKKKKKLS EESKHKERNE FKSNGCEDDQ GKKMKKKRKL VEGNTLNECN DSRSNECEDG  300
EQDKKMKKKK KKLSEESKHK ERNEFKSNEC EDDQGKKMKK KRKLMEGNTL NECNDSRSNE  360
CEDGEQDKKM KKKKKKPSEE SKHKESSEFK SNEGKHKRVT FSDEVETFCC DGLVRGKRFS  420
PEEDETLKAS VFAYIDSHGL GEEGLDKVLH ARLHSEVRGC WKEIAQALPH RPLYSVYQRA  480
HALLENVGRC KWTPDELEFI RKSYEQHGPD WRLIADALGK SRDQVKDLWR RLKYKKARHG  540
HWSQEEYQTL FNLVNMDLRA RSLEPFRKSQ HGXXXXXXXX XXXXXXXXXX XXXXCCEIIF  600
VGRQLVTNWK PETVHIAARS DALYTLDACC MEEVEWDELL EHRSGDACRK RWEQMVQHLG  660
EHARKPFMEQ SHNFSHGNTK KKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123130VKKKKKKL
2150156GKMKKKQ
3338343KKKRKL
4367375KKMKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628408.11e-164LOW QUALITY PROTEIN: RNA polymerase I termination factor
TrEMBLA0A2Z6N5120.0A0A2Z6N512_TRISU; Uncharacterized protein
STRINGXP_004499688.11e-153(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.17e-66MYB_related family protein