PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20937
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 639aa    MW: 71081.2 Da    PI: 7.0946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20937genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13473519455
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Tp57577_TGAC_v2_mRNA20937 473 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 519
                                799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-5553246IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-15472523No hitNo description
SuperFamilySSF474591.22E-18472533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-18473532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10473519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MKIEVGLGGS RLWNEDEKAM VIEVLGVNAF DYLVKNSVSN ENLLMAIGNG ENLQNKLSDL  60
VERSNLSNFS WNYAIFWQIS QSKFGDWVLG WGDGCCREPK EEEEKENFGM KSFLSHNVVE  120
NEKQQRLRKR VLQKLHTTFG GSDEDNYAFG LDHVTDTEMF FLASMYFSFP NGHGGPGKCF  180
ASGKHLWLCD ALKSNSSDYC VRSHLAKSVG FQTIVLVPTD LGVVELGSVR MVGESFELLQ  240
TIKSVFSSQS SLSRVKSISS LDETGDENAP FSSLKVGEII KNNNSFGNLH RHQSNNHGRV  300
EGIGVPKIFG QDLNSVTNFR EKLAIRKMXX XXXXXXXXXX XXXXXXSRPN GNGISFPNGV  360
HGSSWRGSQV VKQHVPADVF SPRPPSTSNV PELANGGGRH DFVLNNFQQQ RNQQMQIDFS  420
GATSRPSVRS IVGESELSDV EASCREDKPS PSDDRRPRKR GRKPANGREE PLNHVEAERQ  480
RREKLNQRFY ALRAVVPNIS KMDKASLLGD AISYINELQA KLKLMESERE QFGSTSKDGS  540
SSILPTNPIT ENHQSKAPDV EIQAAQDGVI VKVSCPIDVH PISKLIQSFN DAEISILESK  600
LNATNDTVFH TFIIKSQSSE QLTKEKLIAA FSRESNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29467532267Transcription factor MYC2
5gnj_B1e-29467532267Transcription factor MYC2
5gnj_E1e-29467532267Transcription factor MYC2
5gnj_F1e-29467532267Transcription factor MYC2
5gnj_G1e-29467532267Transcription factor MYC2
5gnj_I1e-29467532267Transcription factor MYC2
5gnj_M1e-29467532267Transcription factor MYC2
5gnj_N1e-29467532267Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454462RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20937
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444608.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2K3MS760.0A0A2K3MS76_TRIPR; Transcription factor bHLH13-like protein
STRINGXP_004510665.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-93bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]