PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20935
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 302aa    MW: 34767.1 Da    PI: 8.6123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20935genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WTt Ed ll ++v+ +G g Wk+ +++ g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA20935 14 KGPWTTKEDALLTKYVQAHGEGKWKSLPKKAGLLRCGKSCRLRWVNYL 61
                               79******************************99************97 PP
2Myb_DNA-binding54.92.1e-1767112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ T++Ed+ll++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA20935  67 RGNITPDEDDLLIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                                7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.504961IPR017930Myb domain
SuperFamilySSF466894.77E-3011108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241568IPR009057Homeodomain-like
CDDcd001677.36E-91661No hitNo description
PROSITE profilePS5129427.02162116IPR017930Myb domain
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002497.3E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2669116IPR009057Homeodomain-like
CDDcd001674.77E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRAPCCAKV GLQKGPWTTK EDALLTKYVQ AHGEGKWKSL PKKAGLLRCG KSCRLRWVNY  60
LRPDIKRGNI TPDEDDLLIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKIQRNQ  120
QQTCDVKIDC DEQQQQQSKK NNNIKKKNNN NKKKKSDMKK DAKNDNHQVE EKIKVYSPKP  180
IRLKASNLPR RDSDNSLFTF ESNSSIGSQE KEGTEQHVRN RTTCDNVVFE VGVNGENEFV  240
NADMLDIECE SYFNTCGVVD HGKLERLYDE YLQLLSMEDW NYEFDASFAQ SFFDSSNDIN  300
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444592.11e-139myb-related protein 308
TrEMBLA0A2Z6N5U51e-176A0A2Z6N5U5_TRISU; Uncharacterized protein
STRINGXP_004510651.11e-122(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-64myb domain protein 111