PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20557
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 517aa    MW: 57009.6 Da    PI: 5.8812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20557genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.67.3e-1021265081374
                       GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetsekn....... 73 
                                lv+lL++ Aea++   ++  la+ +L rl+el+s+++  ++m+RlaayfteAL+  l + +    +  + ++++          
  Tp57577_TGAC_v2_mRNA20557 126 LVHLLMAGAEALTGstKNRDLAKVILVRLKELVSNHAhgSNMERLAAYFTEALHGLLEGAGGAHNNHHHHNNKHY-Lttsgshd 208
                                689********976337778************77765338*****************984332222221111111.01223445 PP

                       GRAS  74 .sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154
                                 + ++l+a++l++++sP++kf+h+taNqaI e v++e+rvH+iD+di++G+QW++L+q+Las  +++p+lRiT++++  +g  s
  Tp57577_TGAC_v2_mRNA20557 209 nQNDTLTAFQLLQDMSPYVKFGHFTANQAIIEVVAHERRVHVIDYDIMEGVQWASLIQSLASN-NNSPHLRITALSRTGAGrrS 291
                                5999**********************************************************5.777**********8877999 PP

                       GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                  +++etg+rL++fA++lg pf+f+    ++ e++++++L++ +gEal+ n++l+l +l  +s ++     ++L+  k l+Pk+
  Tp57577_TGAC_v2_mRNA20557 292 IATVQETGRRLTSFATSLGQPFSFHHCRLDSDETFRPSTLKLVRGEALVFNCMLNLPHLSYRSPDSVA---SFLNGAKALNPKL 372
                                99************************9999*****************************977777666...9************ PP

                       GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                v++ve+e+    + F+erf+++l++ysa+fdslea++p ++++r+ vEr+++g++i   +    +     +e+ ++W  +l++a
  Tp57577_TGAC_v2_mRNA20557 373 VTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRT--GGEEERKSWGGWLGAA 454
                                **********************************************************99988776..7778889********* PP

                       GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                                GF+ vp+s  + +qaklll  ++ dgyrvee    s+ lvl Wk+r+L+s+S W+
  Tp57577_TGAC_v2_mRNA20557 455 GFRGVPVSFANHCQAKLLLGLFN-DGYRVEEVgvgSNKLVLDWKSRRLLSASLWT 508
                                ***********************.******88777*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.565100486IPR005202Transcription factor GRAS
PfamPF035142.5E-99126508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MYMEMDMDMD AIHDLDFSGH SSLTNTPSSD DDYGCNWNQW SPIVNWDTFA GAQDGFHHLM  60
DTIIDDRTTL LDQLSPTTTT TTTTTEEEEE EEETETTTTT TTTTTTTTTT TEKAQAVGDD  120
IKGLKLVHLL MAGAEALTGS TKNRDLAKVI LVRLKELVSN HAHGSNMERL AAYFTEALHG  180
LLEGAGGAHN NHHHHNNKHY LTTSGSHDNQ NDTLTAFQLL QDMSPYVKFG HFTANQAIIE  240
VVAHERRVHV IDYDIMEGVQ WASLIQSLAS NNNSPHLRIT ALSRTGAGRR SIATVQETGR  300
RLTSFATSLG QPFSFHHCRL DSDETFRPST LKLVRGEALV FNCMLNLPHL SYRSPDSVAS  360
FLNGAKALNP KLVTLVEEEV GSVVGGFVER FMDSLHHYSA VFDSLEAGFP MQNRARALVE  420
RVFFGPRIAG SLGRIYRTGG EEERKSWGGW LGAAGFRGVP VSFANHCQAK LLLGLFNDGY  480
RVEEVGVGSN KLVLDWKSRR LLSASLWTCS SSDSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-4913451126381Protein SCARECROW
5b3h_D6e-4913451126381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20557
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8321380.0AJ832138.1 Medicago truncatula nsp2 gene for GRAS family protein.
GenBankCR5387220.0CR538722.1 M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499407.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2K3PIR80.0A0A2K3PIR8_TRIPR; Nodulation-signaling pathway 2 protein
STRINGXP_004499407.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-137GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]