PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20370
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 559aa    MW: 63012.1 Da    PI: 7.3173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.61.4e-24486544259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +D ++W+KYG K++kgs+++r+YY+C+s  +Cp++k ve+s++++++ ++t+eg Hnh 
  Tp57577_TGAC_v2_mRNA20370 486 EDLWAWKKYGEKTIKGSPHSRNYYKCSSFvDCPARKIVEKSKTNENIYVVTFEGVHNHA 544
                                79************************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-25474546IPR003657WRKY domain
SuperFamilySSF1182904.58E-22479546IPR003657WRKY domain
PROSITE profilePS5081126.131480546IPR003657WRKY domain
SMARTSM007746.4E-28485545IPR003657WRKY domain
PfamPF031062.7E-20486543IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MANNDWDLYS IVSSNNVTTF NKHATIFETS SLPQTSTTII TTNNIVLPQN TTPSYFNDFN  60
LTHESSGVHM PPSSPTHTTF IPMPSSPTNI NTTTTIADTS VQYSYQNANY SIFNEQQQMQ  120
SNDWDLYSIV SSNKVTTFTN PTTNFETSSL PQTSTTITTT NNIVSPQNTT PSYFNDFNLT  180
HENSVVPMPS SPTHXXXXXX XXXXXXXXXX XXXXXXXNTH IKMLIQYLAN NRCNQIIGIF  240
IPLFSPQNTT PSYFNHFNFT NKNSAVPMPF APTHTTFIPM PSSPTNKTTT TTIIPTHTTT  300
TTAITNTSVQ CSNHNSTFFD YPIFSEQQQM QSNDCTESEK MLIKYDSTIT TTTFTLPISN  360
TTAFTIPKTA TTIPTGTTSS TTIIPTITPI TNTITSFYGT NQNATFSNLS TLINQHQIQP  420
NNENQVFVPK PYIETTTADF DRAYNQPLFS PQPIAHPQQP KSTSRKRNYK NRETLERHMS  480
EEQLSEDLWA WKKYGEKTIK GSPHSRNYYK CSSFVDCPAR KIVEKSKTNE NIYVVTFEGV  540
HNHAPPERKS QKSHKRQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-124805461277Probable WRKY transcription factor 4
2lex_A3e-124805461277Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-23WRKY DNA-binding protein 27