PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20359

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 162aa MW: 18687.5 Da PI: 10.2606

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20359	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.5	8.6e-14	10	48	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i+++s r+ ++ kR+ gi+KK EL vLCd+ ++ii Tp57577_TGAC_v2_mRNA20359 10 FISSNSARKASYNKRKRGIIKKVRELTVLCDVPGCIIIS 48 89**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.217	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-13	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.49E-16	2	85	No hit	No description
SuperFamily	SSF55455	6.8E-19	2	87	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-12	10	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MTRRKVKLAF ISSNSARKAS YNKRKRGIIK KVRELTVLCD VPGCIIISNP FNSDETAVFP 60 DREGAMQVIE RYRNTAMKDE SKNVNQQSFL LQRITKGREK LERLRHDNHE KETGIRMLDC 120 IQNNKLPDNL SIPDLHDLDK IVEKNLKEIE NKLVQLNLSN N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20359

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003614286.1	4e-68	agamous-like MADS-box protein AGL80
TrEMBL	A0A2K3KZ81	1e-112	A0A2K3KZ81_TRIPR; Agamous-like mads-box protein agl80-like
STRING	AES97244	1e-67	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13237	9	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	4e-30	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20359