PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20300
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 430aa    MW: 47682.8 Da    PI: 4.6643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20300genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-053193561254
                                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Tp57577_TGAC_v2_mRNA20300 319 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 356
                                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-12317375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.67E-6317360No hitNo description
Gene3DG3DSA:4.10.280.108.5E-9321364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAEEFQAGIC GETWWNINNS TRSVFPIMMN SSSTCSVAAN DVGNYSTWQN ELLGLKETRT  60
CSIDETNNFD FSDCALSFLD PQKPPQQSES LANGSGSMLI DSTLQIMGFD LSSPTSSNWN  120
HSLFNCNGRQ ESNFHSMIQE ETCLDSSNDS QIQVSTVDTF IKPMDQQFSI DSYGYPSNLI  180
QSLFDNDPQP QSHNSLYTNP SSMSYSSSNE LSPTWSNVSS LMKPSMPKQL SSGLQFSNNT  240
PFWNASAEAL NDIRAGVLAS SHPQYQSPNF DQDNKFNSSN ALLNKLKREK SPETKNSSEA  300
AIKRPRIETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV  360
NVLSTPYMKN GSPIQHQQVC DNVKDSQEKK QDLRSQGLCL VPISSTFPMA NETPVDFWTP  420
TFGGPLFGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485677.10.0transcription factor bHLH112-like isoform X2
TrEMBLA0A2K3P6720.0A0A2K3P672_TRIPR; Transcription factor bHLH123-like protein
STRINGXP_004485676.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-71bHLH family protein