PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2021
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28795.8 Da    PI: 9.6173
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2021genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.6e-311969151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkly+yss
  Tp57577_TGAC_v2_mRNA2021 19 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSS 69
                              79***********************************************96 PP
2K-box107.41.6e-35871843100
                     K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                               +++ + ++++ +e++  e+akLk+++e Lqr+qR+++GedL+ LslkeLq+LeqqL++slk+iRs+Kn++++e+i+elqkk k+l
  Tp57577_TGAC_v2_mRNA2021  87 ERQLVTNDQSPNENWVLEHAKLKARMEVLQRNQRNYMGEDLDGLSLKELQNLEQQLDSSLKHIRSRKNQVMYESISELQKKDKAL 171
                               567777888999************************************************************************* PP

                     K-box  88 qeenkaLrkklee 100
                               qe+n+ L+kk++e
  Tp57577_TGAC_v2_mRNA2021 172 QEHNNLLSKKIKE 184
                               **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-401170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.4221171IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-3412102IPR002100Transcription factor, MADS-box
CDDcd002652.61E-411285No hitNo description
PROSITE patternPS0035001367IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-311333IPR002100Transcription factor, MADS-box
PfamPF003192.0E-252067IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-313348IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-314869IPR002100Transcription factor, MADS-box
PfamPF014868.7E-3093182IPR002487Transcription factor, K-box
PROSITE profilePS5129717.18998188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
LINNHIVGKK MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST  60
KGKLYDYSSD PCMERILERY ERYSYTERQL VTNDQSPNEN WVLEHAKLKA RMEVLQRNQR  120
NYMGEDLDGL SLKELQNLEQ QLDSSLKHIR SRKNQVMYES ISELQKKDKA LQEHNNLLSK  180
KIKEKEKQLA QEEQQNSMEV NPIETQQLES MIIPAGGSLQ GKFNEENAAK TQGSAINLPS  240
WMIRPINE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211184173Myocyte-specific enhancer factor 2B
1tqe_Q2e-211184173Myocyte-specific enhancer factor 2B
1tqe_R2e-211184173Myocyte-specific enhancer factor 2B
1tqe_S2e-211184173Myocyte-specific enhancer factor 2B
6bz1_A2e-211184173MEF2 CHIMERA
6bz1_B2e-211184173MEF2 CHIMERA
6bz1_C2e-211184173MEF2 CHIMERA
6bz1_D2e-211184173MEF2 CHIMERA
6c9l_A2e-211184173Myocyte-specific enhancer factor 2B
6c9l_B2e-211184173Myocyte-specific enhancer factor 2B
6c9l_C2e-211184173Myocyte-specific enhancer factor 2B
6c9l_D2e-211184173Myocyte-specific enhancer factor 2B
6c9l_E2e-211184173Myocyte-specific enhancer factor 2B
6c9l_F2e-211184173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9741860.0JN974186.1 Pisum sativum MADS-box protein (FULb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508656.11e-146truncated transcription factor CAULIFLOWER A
SwissprotQ424291e-107AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S2YR961e-145A0A1S2YR96_CICAR; truncated transcription factor CAULIFLOWER A
STRINGXP_004508656.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-100AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]