PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20202
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 486aa    MW: 54627.9 Da    PI: 7.2268
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20202genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.27.4e-08133195163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                eke +r rr   NRe+Ar   +R++a +eeL +k+++L  eN+ Lk + e   ke+++l++ +
  Tp57577_TGAC_v2_mRNA20202 133 EKEARRIRRVLANRESARQTIRRRQALTEELNRKAATLVMENENLKRKKELALKEYQSLETTN 195
                                799*******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576128No hitNo description
PfamPF001705.3E-7133195IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-6133197IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.496135198IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.1E-5137193No hitNo description
SuperFamilySSF579593.0E-5137192No hitNo description
CDDcd147021.09E-12138189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MESDKRYDST SSSLSFSPTS SSSSSSSCAS EDRSVKTEEI EAAETLAYLA RLAMRQTTHS  60
PDSLIPHSDP PQHLQGQAVS GQQLDGKIYS TTSVETERTQ ESDCLRNMKV EQNADLPKTT  120
HCNKSRRNLT EEEKEARRIR RVLANRESAR QTIRRRQALT EELNRKAATL VMENENLKRK  180
KELALKEYQS LETTNKLLKA QVTKSINTKM EKAPVEQELS VAEAAPMHGN SPWFIYNHFP  240
VRQLFWPAIF QSSKQVQLQH TPFNSIAIPS HVYVSCPSES ESPHKQNNLV NDNQTQNPLY  300
MFPCPWLYPP PEIGNGQPPP SSGLEDKQDN LPLGEQCSTS LSLNRVENVD YHATLPIKLK  360
TEASDWTESR SSNDPDHATP NFSLDGGEQK TRCQIEMFHG PAVDCNGHAH VVKQEPELQL  420
HSASDTNISS TASHIKPYSL EKKQEQFICT GKNLVDAVAA AEARKRRKEL TKLKSNQSRQ  480
FRMEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463468RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1540340.0AC154034.1 Medicago truncatula chromosome 7 BAC clone mth2-71n23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625781.10.0uncharacterized protein LOC11434766 isoform X1
TrEMBLG7L6020.0G7L602_MEDTR; BZIP transcription factor
STRINGAES819990.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64002834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-35bZIP family protein