PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G19490.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 471aa MW: 52632.6 Da PI: 5.6807

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G19490.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.1	4e-08	156	218	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e +r rr NRe+Ar +R++a +eeL +k++ L+ eN+ L+ e + ke ++l++ + AT1G19490.1 156 EREERRIRRILANRESARQTIRRRQAMCEELSKKAADLTYENENLRREKDWALKEFQSLETIN 218 78899*******************************************999999999988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-9	156	220	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	156	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.979	158	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.72E-6	160	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.1E-7	160	226	No hit	No description
CDD	cd14702	1.22E-12	166	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MELEPISSSC CSSSSSSSGE ENTAAANMTE MEAAEALADL AQLAIMREQV FESAASWGSK 60 GKRVRKRVKT ESPPSDSLLK PPDSDTLPTP DLAEERLVKE EEEEEEVEPI TKELTKAPVK 120 SEINGETPKP ILASTLIRCS RSNGCGRSRQ NLSEAEREER RIRRILANRE SARQTIRRRQ 180 AMCEELSKKA ADLTYENENL RREKDWALKE FQSLETINKH LKEQVLKSVK PDTKEPEESP 240 KPSQVEMSTS STPFYFYNQN PYQLFCWPHV TQSSNPMISP LEFPTSGGAS AKTITTQEHE 300 NAADDNGQKT HFYVVPCPWF LPPPDHSNGV PFGLQDTQRG TFSNGHHIDD SSARPMDVTE 360 TPRSHLPTRI KEEDSGSPET RPLYDLNESA TEVLSEGGDG FPVTQQAYSL KHEDVSETTN 420 GVTLMPPGHH VLISLPEKKH GSLAAAEARK RRKELTRLKN LHGRQCRMQV G

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MELEPISSSC CSSSSSSSGE ENTAAANMTE MEAAEALADL AQLAIMREQV FESAASWGSK  60
GKRVRKRVKT ESPPSDSLLK PPDSDTLPTP DLAEERLVKE EEEEEEVEPI TKELTKAPVK  120
SEINGETPKP ILASTLIRCS RSNGCGRSRQ NLSEAEREER RIRRILANRE SARQTIRRRQ  180
AMCEELSKKA ADLTYENENL RREKDWALKE FQSLETINKH LKEQVLKSVK PDTKEPEESP  240
KPSQVEMSTS STPFYFYNQN PYQLFCWPHV TQSSNPMISP LEFPTSGGAS AKTITTQEHE  300
NAADDNGQKT HFYVVPCPWF LPPPDHSNGV PFGLQDTQRG TFSNGHHIDD SSARPMDVTE  360
TPRSHLPTRI KEEDSGSPET RPLYDLNESA TEVLSEGGDG FPVTQQAYSL KHEDVSETTN  420
GVTLMPPGHH VLISLPEKKH GSLAAAEARK RRKELTRLKN LHGRQCRMQV G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	453	RKRRKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.41744	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT1G19490
AtGenExpress	AT1G19490

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G19490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G19490

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099875	0.0	AY099875.1 Arabidopsis thaliana unknown protein (At1g19490) mRNA, complete cds.
GenBank	BT000319	0.0	BT000319.1 Arabidopsis thaliana unknown protein (At1g19490) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_173381.1	0.0	Basic-leucine zipper (bZIP) transcription factor family protein
TrEMBL	Q8L5Y2	0.0	Q8L5Y2_ARATH; Basic-leucine zipper (BZIP) transcription factor family protein
STRING	AT1G19490.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11211	24	28
Representative plant	OGRP4569	13	18

Link Out ? help Back to Top
Phytozome	AT1G19490.1
Entrez Gene	838535
iHOP	AT1G19490
wikigenes	AT1G19490

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jakoby M, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci., 2002. 7(3): p. 106-11 [PMID:11906833] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] Deppmann CD, et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res., 2004. 32(11): p. 3435-45 [PMID:15226410] Deppmann CD,Alvania RS,Taparowsky EJ Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol. Biol. Evol., 2006. 23(8): p. 1480-92 [PMID:16731568] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474]