PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19816
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 306aa    MW: 34241.6 Da    PI: 6.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19816genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11142190255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++ h ++Er+RR +i ++f  L   +P +     kK +K +iL +A++Y+k+Lq
  Tp57577_TGAC_v2_mRNA19816 142 CMDHIMAERKRRLEIAQKFIALSATIPGL-----KKTDKTSILCEAINYVKQLQ 190
                                788**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-15132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.872140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-9142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-8145194No hitNo description
Gene3DG3DSA:4.10.280.106.0E-15145204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDQSWENWPL HSEFGDDEEF LRDIILQPPV TYSGSSLSSS SNEMDGSDWS GKKVHNPSTT  60
LSSNTPGPRT FILSFDKSTI IPATTTQDED EDEEEEEEPR IKSRSCGKSN NNNNNKRSLE  120
LPKVKVSSST KSGKKSRSDS QCMDHIMAER KRRLEIAQKF IALSATIPGL KKTDKTSILC  180
EAINYVKQLQ ERVKELEDPN KKSKESTLIN LKTNEKSVVD VKARVLGNEV LIEMHCEKEN  240
GIELKILNHL QNLHLVVTAS TVFPFGNSNL GFTIVAQMGD GYKLTVDDLV KTLQQVPLIN  300
MRRST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19816
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597972.11e-129transcription factor bHLH18
TrEMBLG7IMB31e-128G7IMB3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682231e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-31bHLH family protein