PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19730
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25812 Da    PI: 8.6592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19730genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.1e-151050242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               +i n++ r+ ++ kR+ g lKK eELS+LC+++++ i++++
  Tp57577_TGAC_v2_mRNA19730 10 FIVNDTARKASYNKRKMGFLKKVEELSILCGIDACAIVYGP 50
                               799************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.755149IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-20294IPR002100Transcription factor, MADS-box
CDDcd002664.29E-27282No hitNo description
PRINTSPR004045.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTRKKVKLAF IVNDTARKAS YNKRKMGFLK KVEELSILCG IDACAIVYGP YEPQPDIWPS  60
PLGVQNVVFK FRSMTELEHN KKKFNQEDYL KQRVSKARDQ LMKLKRANME NEMKLFMYKS  120
LQENEIMFQN LSMEELNVLF WLIDQNLKDI GVRILEASQI ISAPSPGQLQ MAPPPQLAAP  180
TTTRMDHDGH TGMTLNDADI IQRQLDMDLM LNGNLHDANG PNMLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445020.12e-73agamous-like MADS-box protein AGL80
TrEMBLA0A2K3LZB11e-164A0A2K3LZB1_TRIPR; Agamous-like mads-box protein agl80-like
STRINGAES877222e-70(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-43AGAMOUS-like 80