PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19500

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 289aa MW: 32863.9 Da PI: 5.9045

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19500	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.1	3.4e-29	124	211	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGF +r+sk ++s+r+g+++ r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++g w +tk+++eH Tp57577_TGAC_v2_mRNA19500 124 FYNAYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEH 205 ****************************************9988..9******************************* PP FAR1 86 nHelap 91 +H+l+p Tp57577_TGAC_v2_mRNA19500 206 THPLTP 211 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-26	124	211	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MCNGWELSCI KGHVKQKFTL NLTHHVLESQ KSFVAAVEFE IDDNTNGEPV GNATMGEVSS 60 SIADKDIVDC SSLDPTDEQD QDDNMTQDSS GADQIPSPAP LSVVRIEEPY LGQEFVSEAE 120 AHAFYNAYAT RVGFVIRVSK LSRSRRDGSV IGRALVCNKE GFRMPDKREK IVRQRAETRV 180 GCRAMIMVRK LNSGLWSITK FVKEHTHPLT PGRGRRDFVY EQYPSGHDRV RELTQQLDLE 240 KKRTETYKRN LELLYEYIEE HNETVSKQIQ QIVESVKEVE AKEQENPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19500

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143407	0.0	BT143407.1 Medicago truncatula clone JCVI-FLMt-16G7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486914.1	1e-161	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_012570522.1	1e-161	protein FAR1-RELATED SEQUENCE 3-like isoform X2
TrEMBL	A0A2K3NUT9	1e-176	A0A2K3NUT9_TRIPR; Uncharacterized protein
STRING	XP_004486914.1	1e-160	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-93	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19500