PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1947
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 354aa    MW: 37864.6 Da    PI: 5.697
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1947genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17259292134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Tp57577_TGAC_v2_mRNA1947 259 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 292
                               99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-753346IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-16253303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332253289IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14257316No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14257290IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.07E-14258305No hitNo description
PfamPF003202.5E-15259292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVGPNFMDEL DCGSFFDHID DLLDFPVDDV DTAAASLPSV ASVGNCNSLA SIWPNESESF  60
PASDSVFSGG SASDLSAELS VPYEDIVQLE WLSNFVEDSF SEGSLTMKKV EQQPSFPSIC  120
VPKEESVHNQ FQTSSPVSVL ESSSSCSGGK TTTGIYIPVP CGRARTKRPR PATFNPRSAM  180
QLISPTSSSA GENVQPNVIS TKAASSDFDS FAESRIVSKK PKLASGESKK KKKIKMPLPA  240
AAAPADSGDQ NGSLPVRKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA  300
ASPTFCPALH SNSHKKVLEM RVKDIENSGF ESHSAASPEL IPNTNSILAL EYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1947
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496271.10.0GATA transcription factor 8
RefseqXP_004496272.10.0GATA transcription factor 8
RefseqXP_012570064.10.0GATA transcription factor 8
TrEMBLA0A2K3L3120.0A0A2K3L312_TRIPR; GATA transcription factor
STRINGXP_004496271.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-43GATA family protein