PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19442
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 442aa    MW: 49852.6 Da    PI: 9.4195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19442genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.76e-201252041398
                                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                +++l lpk+f ++ ++k   +  +tl+ +sg  W+v l  + ++++ ++++GW+eF k++ Lke+Df+vFk++g+s f   v +
  Tp57577_TGAC_v2_mRNA19442 125 EQQLALPKTFSANVKKK--LQENVTLKGPSGVLWNVGL--TTRDDTLYFANGWQEFMKDHSLKENDFLVFKYNGESHF--EVLI 202
                                4579******9666544..6669***************..9********************************99999..8888 PP

                                E- CS
                         B3  97 fr 98 
                                f+
  Tp57577_TGAC_v2_mRNA19442 203 FD 204
                                87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-23111204IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.792113206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-23115204IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-20115204No hitNo description
SMARTSM010194.8E-18116206IPR003340B3 DNA binding domain
PfamPF023621.8E-16125204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
WQRKQTILLK KSILLLMAVL NVVRLRNIGV SIRTPLVVSF ETTNETTFNT GVESASPKHF  60
MADAVAKTTP VVLPLFFFLL ELKPQPFQSQ TVFQMGGGSK SWQEDIYWTH FQFIHFTQFL  120
TTDFEQQLAL PKTFSANVKK KLQENVTLKG PSGVLWNVGL TTRDDTLYFA NGWQEFMKDH  180
SLKENDFLVF KYNGESHFEV LIFDGESLCE KAASYFVGKC SNVKAEQGGS KAKGTNTATE  240
EVINTASNGG VECGSPVKFQ RLNSIGTPLD VPFVTTNETG VESASPEEXX XXXXXXXXXX  300
XPPKKPAKGP RGLLMKLFLS RLRSEEQHRK QLRSEEQHRK QLILVREYLR RNTQSCQISA  360
MEAPYSDIAV PHVGRYGGFL ALCHSLPSTM DITSLLSDSA LTLADDMGRN DKGNKPKVWR  420
IYVRRNKKRE NDEVARRESE N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19442
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0536381e-119BT053638.1 Medicago truncatula clone MTYFT1G-K-15 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-46B3 family protein