PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19239
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 707aa    MW: 78579.8 Da    PI: 5.9713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19239genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32244300259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +DgynWrKYGqK+vkgs++prsYY+Ct+a+C+vkkkvers+ d++++ei+Y+g+Hnh 
  Tp57577_TGAC_v2_mRNA19239 244 EDGYNWRKYGQKQVKGSDYPRSYYKCTQANCQVKKKVERSH-DGHITEIIYTGNHNHV 300
                                8****************************************.***************6 PP
2WRKY101.45.4e-32446504159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a++ k+v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA19239 446 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTSGCTVRKHVERAAHNMKYVITTYEGKHNHD 504
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-27233302IPR003657WRKY domain
PROSITE profilePS5081124.179238302IPR003657WRKY domain
SuperFamilySSF1182901.57E-24239302IPR003657WRKY domain
SMARTSM007743.0E-34243301IPR003657WRKY domain
PfamPF031064.4E-24244299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-35431506IPR003657WRKY domain
SuperFamilySSF1182904.58E-28439506IPR003657WRKY domain
PROSITE profilePS5081137.367441506IPR003657WRKY domain
SMARTSM007741.4E-36446505IPR003657WRKY domain
PfamPF031061.9E-24447504IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEQDDDNNKK SIAERRGFNN NVAKINTRIS HFSATTPLVS PAPQSARFTI PPGISPTALL  60
ESPIMLPNSM VMPSPTTGSF AMLPPLTDER SMLTSVTHEQ RKLDVPTASF KFKSQANLDP  120
NSLSPYYDSL NEVSSNCHMM TQGHRDIQMV FQDQQVLDFS FSEDFSNDYS ARNNGVHFYN  180
DVKMIDDVII DGNNVDMPIS CSEETSDEST LPENSINDDD IGQKPDLEDE HKEMTHATGA  240
KTLEDGYNWR KYGQKQVKGS DYPRSYYKCT QANCQVKKKV ERSHDGHITE IIYTGNHNHV  300
KPHSSRRGSP PSNDEKSEIV ETNETYDRAD ADSDGKHNME WKLDGQERMS LPFTVTGLSN  360
PTKRVRSLGM SESDNALEHS SAHANHDGDK DGATQAVLPP RGDTEEDESE SKRRKHESYP  420
VQTMVPSRAI REPRVVVQVE SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTTSGCTVR  480
KHVERAAHNM KYVITTYEGK HNHDVPIARN NNYISANDAA LPSRGANVHA SGIPRSETHQ  540
TLAPHFDRKP DSTNEFLRSN LMGSFSDMNF GPSSISQLKY SSLNSILPFG AYGTNPEHGV  600
APQAGPIASI FPDFPMPLPM NLPSSGNFSL PGINFNYAQP MNSVQSYLSG QLVMDIDAGY  660
LRPKQELKDE SLYATCAPSL DHASASFTPP PPSQSTYQSA MQNFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34243506877Probable WRKY transcription factor 4
2lex_A2e-34243506877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625864.10.0probable WRKY transcription factor 33
RefseqXP_024625865.10.0probable WRKY transcription factor 33
TrEMBLA0A2K3P9B50.0A0A2K3P9B5_TRIPR; WRKY transcription factor
STRINGAES803920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-94WRKY DNA-binding protein 2