PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YC | ||||||||
Protein Properties | Length: 85aa MW: 9328.91 Da PI: 8.4894 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.9 | 2.5e-14 | 15 | 79 | 13 | 74 |
NF-YC 13 atdfknhelPl...arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 f+ +++Pl arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ Tp57577_TGAC_v2_mRNA19094 15 LGVFAATKMPLsykARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTM 79 456888999995556*************************************9998887777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.73E-12 | 28 | 84 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-16 | 28 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-21 | 29 | 84 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
NSDCKQQCKN EDSSLGVFAA TKMPLSYKAR IKKIMQADED VGKIALAVPV LVSKALELFL 60 QDLCDRTYEI TLQRGAKTMN ALHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-17 | 29 | 84 | 15 | 70 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19094 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918300 | 3e-74 | JQ918300.1 Medicago truncatula nuclear transcription factor Y subunit C8 (NF-YC8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245472.1 | 2e-32 | PREDICTED: dr1-associated corepressor homolog, partial | ||||
Refseq | XP_015876122.1 | 2e-32 | dr1-associated corepressor isoform X2 | ||||
Refseq | XP_028192968.1 | 7e-34 | dr1-associated corepressor-like | ||||
Refseq | XP_028192969.1 | 7e-34 | dr1-associated corepressor-like | ||||
Swissprot | Q14919 | 2e-16 | NC2A_HUMAN; Dr1-associated corepressor | ||||
TrEMBL | A0A0B2PUJ1 | 2e-31 | A0A0B2PUJ1_GLYSO; Dr1-associated corepressor | ||||
STRING | GLYMA06G04161.1 | 7e-34 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-32 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19094 |