PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1902
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 640aa    MW: 69664.8 Da    PI: 7.4559
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1902genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.4e-06273293526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f +   C +Gd C +aHg
  Tp57577_TGAC_v2_mRNA1902 273 PCPEFKK-RSCTRGDMCEYAHG 293
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-167147IPR020683Ankyrin repeat-containing domain
CDDcd002049.99E-149136No hitNo description
Gene3DG3DSA:1.25.40.204.5E-179141IPR020683Ankyrin repeat-containing domain
SMARTSM002483101041IPR002110Ankyrin repeat
PfamPF127961.8E-819126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.74358161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.735888IPR002110Ankyrin repeat
PROSITE profilePS5008811.24793128IPR002110Ankyrin repeat
SMARTSM002480.003893125IPR002110Ankyrin repeat
PROSITE profilePS5010311.563273295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MKTLAVNTED SFSSLLEFAS NNDIEGFKLL LDKEGASSIN KAGIWYGRQC GSKQIVLDHK  60
TSLMVASTYG SIDVIKLIVS YPEADVNFAC GVSKMTALHC AASGGSVNVV DAVRLLILAG  120
ADVNCVDANG NRPVDVIVVP PKLQSMKSVL EELLLDNASD NGSIGDFSVS VSVNSSSSGL  180
LDNGMTLPYS PSVSPPSPVV GSKFTEKKEY PVDPSLPGIK NSIYASDEFR MYSFKVRPCS  240
RAYSHDWTDC PFVHPGENAR RRDPRKFHYS CVPCPEFKKR SCTRGDMCEY AHGVFESWLH  300
PALYRTHLCN DGTSCNRRVC XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLRPLH  360
PSTGSAISSP RSSGSALNVM DIAAAMNLFP GSPSSVSSMS PSHFAQPMSP SGNCMSFSSA  420
AWAQQNVPTL HLPGANFQSS RLRSSLSARD IPPEDFNVLS NFDCQQHLLN DLSCSAQPRP  480
GSCWSKALNP SNHEELFSAE ILSSPQYSDQ SMASVFSPSR KSAAMNHFNQ LQNMLSPTNT  540
NMLSPKNVEH PMLQASFGVP FSGRMSPRSM EPISPMGPRM SPFGQREKQL RSISSRDLGS  600
NIPASVVGSP TNPRSKWGSP NGMVDWSVNG DELSRQWDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510954.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K3PJC10.0A0A2K3PJC1_TRIPR; Zinc finger CCCH domain-containing protein 30-like
STRINGXP_004510954.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]