PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19010
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 49aa    MW: 5545.69 Da    PI: 10.5978
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.61.6e-181049241
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                               +i+n+  r++t+ kR++g+lKK eELS+LC+++++ ii++
  Tp57577_TGAC_v2_mRNA19010 10 FISNDVARKTTYKKRQKGLLKKIEELSTLCGIDACAIIYG 49
                               8*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.66E-18149IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-12149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47149IPR002100Transcription factor, MADS-box
CDDcd002662.57E-18249No hitNo description
PRINTSPR004042.9E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161048IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-113849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
MTRKKVKLAF ISNDVARKTT YKKRQKGLLK KIEELSTLCG IDACAIIYG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKKVKLAFISNDVARKTTYKKRQK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of gametophytes and seeds. {ECO:0000269|PubMed:12815071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by MEA, FIS2 and FIE in seeds, and by PKL after germination. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:16359393}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445020.12e-22agamous-like MADS-box protein AGL80
SwissprotO808052e-15PHE1_ARATH; MADS-box transcription factor PHERES 1
TrEMBLA0A2K3LY463e-25A0A2K3LY46_TRIPR; Agamous-like mads-box protein agl80-like
STRINGPOPTR_0005s00420.11e-20(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.32e-19M-type_MADS family protein
Publications ? help Back to Top
  1. Raissig MT,Bemer M,Baroux C,Grossniklaus U
    Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2.
    PLoS Genet., 2013. 9(12): p. e1003862
    [PMID:24339783]
  2. Jeong CW, et al.
    Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm.
    PLoS ONE, 2015. 10(2): p. e0117431
    [PMID:25689861]
  3. Burkart-Waco D,Ngo K,Lieberman M,Comai L
    Perturbation of parentally biased gene expression during interspecific hybridization.
    PLoS ONE, 2015. 10(2): p. e0117293
    [PMID:25719202]
  4. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]