PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1894
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YA
Protein Properties Length: 288aa    MW: 32067.9 Da    PI: 9.4058
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1894genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.6e-32146202158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hAlrR+Rg+gGrF
  Tp57577_TGAC_v2_mRNA1894 146 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHLHALRRARGNGGRF 202
                               69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-36144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.369145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-27147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.9E-24148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.9E-24179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MPGKPETDDL GVKHSELPSS IYSHQPWWLE NASKSSSADQ LNGSIMNGVT HLEANERQHL  60
VSPSLYVTDK SGGDVVKEQQ NIKHALSSTP FTMDKHLDGH SIVLTSPYSN AEFGQILTTY  120
GQQAMMNPQL YQMHHARVLL PLEMEEEPVY VNAKQYHGIL RRRQSRAKAE LEKKVIKVRK  180
PYLHESRHLH ALRRARGNGG RFLNTKKLEH KDSHAALEKD NNTGTTLVTN KENQGSSNAS  240
QSVHKMQGFN IGYCAGNGFT ALCHSQANGK QESDFFGKER ESNGGIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20146213266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182720.0JQ918272.1 Medicago truncatula nuclear transcription factor Y subunit A7 (NF-YA7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445060.11e-168nuclear transcription factor Y subunit A-4
RefseqXP_024627642.11e-168nuclear transcription factor Y subunit A-4
TrEMBLA0A2Z6NJU20.0A0A2Z6NJU2_TRISU; Uncharacterized protein
STRINGXP_004510988.11e-153(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-33nuclear factor Y, subunit A1