PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28770.3 Da PI: 8.7915 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.2 | 1.8e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+n+ r++t+ kR++g+lKK eELS+LC+++++ ii+++ Tp57577_TGAC_v2_mRNA18191 10 FISNDVARKTTYKKRQKGLLKKLEELSTLCGIDACAIIYGP 50 8**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.783 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.31E-29 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-22 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-16 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MTRKKVKLAF ISNDVARKTT YKKRQKGLLK KLEELSTLCG IDACAIIYGP YDPQPEIWPT 60 PQGVQSVLSK FRTIPEFEKS KKMLNQETFM KQRILKAKDQ VKKQMKDNKE KEMTLLMFQC 120 LNLGEIVHNN LSRTDLNHLD WLIDQNLKDI DKRLEVEDNN YNNGPIQIIT TQNQVPVQMA 180 LPPSPPPATP WKEEMAMVMG HSGMTMNNDD IMQRKFLMDL MVNGNGDETI PFGHPHDANL 240 QSGFWSNQLP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 25 | RKKVKLAFISNDVARKTTYKKRQK |
2 | 16 | 31 | RKTTYKKRQKGLLKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18191 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445020.1 | 1e-107 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 3e-56 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3LY46 | 0.0 | A0A2K3LY46_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | XP_004500461.1 | 3e-92 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-57 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18191 |
Publications ? help Back to Top | |||
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