PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18104

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 696aa MW: 80024.5 Da PI: 6.9144

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18104	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9.5e-21	87	170	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Y YAkevGF vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w++ ++ le Tp57577_TGAC_v2_mRNA18104 87 NYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDAS-----NLRKETRTGCPAMIRMRLVESQRWRIREVTLE 165 5899************************************99887.....99************************** PP FAR1 85 HnHel 89 HnH l Tp57577_TGAC_v2_mRNA18104 166 HNHIL 170 *87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-18	87	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-28	290	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.741	577	613	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.8E-4	584	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	588	615	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MMSEFHTQNL VTVDSQTPPE HEQQHFKMDN ISLCCDQIPD GEGIDILKDE DDVVIELDCQ 60 NDLSEGRKEF LAPAVGMEFE SYDDAYNYYI CYAKEVGFCV RVKNSWFKRN SREKYGAVLC 120 CSSQGFKRIK DASNLRKETR TGCPAMIRMR LVESQRWRIR EVTLEHNHIL GATIYKSIKN 180 MGSGTKKKLL PSCSNAEGQT FKLYRALVID AGGNGNSNFN ARDDKTFSEY SNEMNLKKGD 240 AQAIYNFLCR MQLTNPNFFY LMDFNDEGRL RNVLWVDARS RAACGYFSDV VYFDNTYLSN 300 KYEIPLVAFV GLNHHGQTVL LGCGLLAGEM PESYTWLFRT WVTCMSGCSP QTIITDRCKA 360 LQSLIAEIFP KSHHCFGLSL IMKKVPEKLG GLHNYDGIRK ALIKAVYETL KVIEFEAAWG 420 FMIQRFGVSD HEWLRSLYED RVHWAPVYLK DKFFGGMSAA RPGESISPFF DKYVHKQTPL 480 KEFLDKYELA LHKKYKEESL ADIESRSSSP LLKTKCSFEL QLSRMYTKEI FTKFQFEVGE 540 MFSCFGTTQL HVDGAIVIFL VKERVLIEGN RREIKDFEVL YSRSAGEVRC ICCCFNFYGY 600 LCRHALCVLN FNGVEEIPPK YILSRWKKDY KRLYIPDHTF GSSDDTDRIH RSNQLFRGAL 660 QVVEEGVLSV DHYNIALQAL EESLIKVCDV EQGHE*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MMSEFHTQNL VTVDSQTPPE HEQQHFKMDN ISLCCDQIPD GEGIDILKDE DDVVIELDCQ  60
NDLSEGRKEF LAPAVGMEFE SYDDAYNYYI CYAKEVGFCV RVKNSWFKRN SREKYGAVLC  120
CSSQGFKRIK DASNLRKETR TGCPAMIRMR LVESQRWRIR EVTLEHNHIL GATIYKSIKN  180
MGSGTKKKLL PSCSNAEGQT FKLYRALVID AGGNGNSNFN ARDDKTFSEY SNEMNLKKGD  240
AQAIYNFLCR MQLTNPNFFY LMDFNDEGRL RNVLWVDARS RAACGYFSDV VYFDNTYLSN  300
KYEIPLVAFV GLNHHGQTVL LGCGLLAGEM PESYTWLFRT WVTCMSGCSP QTIITDRCKA  360
LQSLIAEIFP KSHHCFGLSL IMKKVPEKLG GLHNYDGIRK ALIKAVYETL KVIEFEAAWG  420
FMIQRFGVSD HEWLRSLYED RVHWAPVYLK DKFFGGMSAA RPGESISPFF DKYVHKQTPL  480
KEFLDKYELA LHKKYKEESL ADIESRSSSP LLKTKCSFEL QLSRMYTKEI FTKFQFEVGE  540
MFSCFGTTQL HVDGAIVIFL VKERVLIEGN RREIKDFEVL YSRSAGEVRC ICCCFNFYGY  600
LCRHALCVLN FNGVEEIPPK YILSRWKKDY KRLYIPDHTF GSSDDTDRIH RSNQLFRGAL  660
QVVEEGVLSV DHYNIALQAL EESLIKVCDV EQGHE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18104

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135102	0.0	AC135102.16 Medicago truncatula clone mth2-8m3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192103.1	0.0	uncharacterized protein LOC101503771
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2K3P7I4	0.0	A0A2K3P7I4_TRIPR; Protein FAR1-related sequence 6-like
STRING	XP_004486559.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18104

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]