PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA18029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28854.1 Da PI: 8.4986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.2e-08 | 84 | 135 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ h e+E++RR+++ + + Lr+llP ++ ++K s ++ + v+YI+++ Tp57577_TGAC_v2_mRNA18029 84 KKMVHREIEKQRRQEMATLHASLRSLLPIRF--IKGKRSLSDQMNEGVNYINHM 135 6889*************************65..*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.05E-9 | 83 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-4 | 83 | 140 | No hit | No description |
PROSITE profile | PS50888 | 11.128 | 83 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-7 | 84 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
LTKPNMFPLQ RCNELSIPLS NSLNHHPQHH KIPQDLILDD CDSLVFDFTH KQMSISRPPK 60 ILLYTPPPED HNTNLNYIKD VNNKKMVHRE IEKQRRQEMA TLHASLRSLL PIRFIKGKRS 120 LSDQMNEGVN YINHMKKNIK ELSDKRDELK KLSNLSNLKN HTVSCCFSIH KNNGTVGIEI 180 SNFRDQEGVP LSKLLEQLMK VGLEVVSCFS IEVNGRLLHS VQCEVIDSDS VDLSELKRKF 240 SNMNPSFSCS D* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18029 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592388.2 | 1e-119 | transcription factor bHLH118 isoform X2 | ||||
TrEMBL | G7ID49 | 1e-118 | G7ID49_MEDTR; Putative transcription factor bHLH family | ||||
STRING | XP_004496640.1 | 1e-112 | (Cicer arietinum) | ||||
STRING | AES62639 | 1e-112 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25410.1 | 5e-33 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA18029 |