PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17911
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 341aa    MW: 38379.6 Da    PI: 6.3743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17911genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29129190159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  Tp57577_TGAC_v2_mRNA17911 129 LDDGYSWRKYGQKDILGAIHPRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGNHTCN 190
                                59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.732124192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-29124191IPR003657WRKY domain
SuperFamilySSF1182901.57E-26127191IPR003657WRKY domain
SMARTSM007741.1E-41129191IPR003657WRKY domain
PfamPF031064.9E-27130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDSKNLILE LLQGMELARQ LRIYLNVSSS SSNETREILI GKIISTFEKA IEMVNHKGHV  60
NVGESSQQQQ QHTSGTVAIR MFDSPPLSSS PRSEDSDRDH NTPRKRNTLP IRWTKQIRVS  120
PGMAVEGPLD DGYSWRKYGQ KDILGAIHPR GYYRCTHRNV QGCLATKQVQ RSDEDPTIFE  180
ITYRGNHTCN MASLNPIENQ ETNIVNTNPQ SFNHEKPNEQ RLNNLRTSLR VQTENLDFLN  240
QSFAPLIHLP STSELKFENH VLESSYAENF NSPSYVSPAN SGIGHFSMSP SPSGFQNVAS  300
EMIPLATSAA NTPTTTLDFP FDQFQFDGQN FTFDHSPFFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-21129189868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17911
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602195.10.0probable WRKY transcription factor 41
TrEMBLA0A2K3KYI60.0A0A2K3KYI6_TRIPR; WRKY transcription factor
STRINGAES724460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-45WRKY family protein