PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1775
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 299aa    MW: 34659.6 Da    PI: 8.0359
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1775genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.51.1e-21163217255
                   G2-like   2 prlrW..tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               +r+ W  +peL ++F++av+qL G++kAtPk+i elm+v gL  ++v+SHLQk+Rl
  Tp57577_TGAC_v2_mRNA1775 163 NRVSWrsSPELEDKFLRAVNQL-GIDKATPKQIIELMDVRGLETSQVASHLQKFRL 217
                               588886679*************.********************************8 PP
2Response_reg40.41.5e-14201241108
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                               v+++d + ++++++++ + + +y +v + + ++ al ll++ +   +Dlil+D +m++md +++l++ ++e  k+p+i+++  ++
  Tp57577_TGAC_v2_mRNA1775  20 VFVIDHDITQLHAIANTCIQCNY-HVMTSTLASFALSLLRQTKgpfFDLILIDAQMSDMDTYDFLERVTQEI-KIPVIIMGVDNT 102
                               7999*******************.9999999999999999999999**********************9988.9*******7665 PP

                               HHHHHHHHHTTESEEEESS--HHHHH CS
              Response_reg  83 eedalealkaGakdflsKpfdpeelv 108
                                   ++    Ga d+  Kp dp+++ 
  Tp57577_TGAC_v2_mRNA1775 103 ----TRERMNGACDYWLKPLDPNNIK 124
                               ....5556679999999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.6E-1917153No hitNo description
SuperFamilySSF521723.98E-1817143IPR011006CheY-like superfamily
SMARTSM004482.3E-518127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.08819131IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-1020125IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.07E-1321124No hitNo description
Gene3DG3DSA:1.10.10.604.0E-21160218IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-19164218IPR006447Myb domain, plants
SuperFamilySSF466894.48E-12170218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALSTIDHLI HYQLQESLRV FVIDHDITQL HAIANTCIQC NYHVMTSTLA SFALSLLRQT  60
KGPFFDLILI DAQMSDMDTY DFLERVTQEI KIPVIIMGVD NTTRERMNGA CDYWLKPLDP  120
NNIKSMWLHV TRIPHDQIQR VSEVVKTRQK RKKRNEESET KMNRVSWRSS PELEDKFLRA  180
VNQLGIDKAT PKQIIELMDV RGLETSQVAS HLQKFRLRRF NCSSKKAKPK SGRENSNVPR  240
ESIQVVESMP EHDKKSNNNF HAQQQHPIPM VFDDFEVSNI STNKTNMMLD DSSSLYEQG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1775
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LYW70.0A0A2K3LYW7_TRIPR; Response regulator receiver domain protein (Fragment)
STRINGXP_004515485.15e-48(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.13e-32response regulator 14