PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17746
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 283aa    MW: 31458 Da    PI: 7.547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17746genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-10756154
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +v+ +k+L
  Tp57577_TGAC_v2_mRNA17746  7 RKTQKADREKLRRDRLNEQFVELGNILDPD----RPKNDKATILGDTVQLLKDL 56
                               6788999********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-13579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.944656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-7761No hitNo description
SMARTSM003533.3E-71262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDCTPARKTQ KADREKLRRD RLNEQFVELG NILDPDRPKN DKATILGDTV QLLKDLTSQV  60
SKLKDEYTML NEESRELSQE KNDLREEKAS LKSDIENLNN QYQLQLRTMY PWPAMDHSVM  120
MAPPSYPYPV PMPVPPGSIP MQPYPYYANQ HPAVIPNPCS TYVPFLAPNT IVEQQSTQYI  180
PPPLHPGSRS HVSGKQDSKN KSSRESKAQR NEDSNDVATD LELKTPGSSA EQNLSSAQKK  240
SSKSSRKENS FTEGSSLGKC SSSHSVQDSS SSSVVGGRKS TE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456557.11e-169transcription factor bHLH121 isoform X2
RefseqXP_024637427.11e-169transcription factor bHLH121 isoform X2
RefseqXP_024637428.11e-169transcription factor bHLH121 isoform X2
SwissprotQ9LT233e-94BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2K3MW430.0A0A2K3MW43_TRIPR; Transcription factor bHLH121-like protein
STRINGXP_004505689.11e-156(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-85bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]