PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA17575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25835.1 Da PI: 9.5983 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.4 | 2.5e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i ++ r+ t+ kR+n +lKK ELS+LC++e++ i++++ Tp57577_TGAC_v2_mRNA17575 10 FIVSDEARKATYKKRKNSLLKKVDELSTLCGIEACAIVYGP 50 6889999********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.727 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.2E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.69E-25 | 2 | 83 | No hit | No description |
PRINTS | PR00404 | 6.6E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-22 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MARGKVKLSF IVSDEARKAT YKKRKNSLLK KVDELSTLCG IEACAIVYGP YEPEPEIWPT 60 TCGVQRVLSK FRTMPEFEKT KKMFNQEAFM KQRLTKAEEQ LKRLRKNNKD IEMKNLMSQC 120 IKEGKVVHNN MSMLDLNALN WLIDQNLKDI SRRMEAKNLH QTHIIGNQSQ VQLQMTYVPP 180 PPPAITSSKE GMSMVLIGDG HVEMVINNDD ITQEKLFMDS MINGN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17575 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445020.1 | 4e-78 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3LUY1 | 1e-167 | A0A2K3LUY1_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | XP_004500461.1 | 2e-72 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-53 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA17575 |