PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 611aa MW: 68289.2 Da PI: 9.2616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.2e-08 | 518 | 567 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + ++ k+Rt ++k++w ++ Tp57577_TGAC_v2_mRNA1722 518 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdnaKHRTYVDLKDKWKTL 567 567888999**********************99**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 4.53E-6 | 324 | 407 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.75 | 513 | 572 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-7 | 517 | 570 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 518 | 568 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.12E-16 | 519 | 569 | No hit | No description |
SuperFamily | SSF46689 | 1.22E-15 | 519 | 600 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
MVMQKRLDYG FNGYQVPSVP RASRSPRGRG TVRKKPESNQ IQAFDILASV AGNLLQKNQS 60 SILDNASSAK DPRTFSGINI KENKQENQLG SLKEEQFEPG TCSEVVSGSV PSLQEKHENQ 120 RVTSDSSLHG NHLEGQGQNE LERDDERVKL QNTNEKIIRI KNRSDGSIEQ GQKASKDCSA 180 ENHAEKPSPE GHCRRNLDSL PNGFGSRKLV NRDDDENFVQ CTQLNSKNKI SSDPPPDTLK 240 VKDASPFVKD ENNSGDNSVL ENSERMYPFK KRKFYYQTSS STSDSWSHCQ GTVDSSYTRV 300 NGTNHGAVIE ESSSIADEQV HPGSKGCNVK LSIKSFKVPE LFIDIPETAT IGSLKRTVME 360 AVTAILGDEL HVGILLQGKK VRDDSKTLIQ TGISQDDKHH RLGFMLEPRH NRISSSYNEE 420 PCFLTTNSRQ KLSRQSTSLM LQQGTYNVSR ERSTVKIENC AEGDHNAVSS LGDTSANNNN 480 MSKCRALVTV PAINMDALAV VPYRRKSGNS DFGQRRIRRP FSVLEVEALV QAVEKLGTGR 540 WRDVKQRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLAAHAYWSQ 600 QQCKHQLKSM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 8e-55 | 502 | 610 | 1 | 109 | Telomere binding protein TBP1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1722 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013448864.1 | 0.0 | telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_024625720.1 | 0.0 | telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_024625721.1 | 0.0 | telomere repeat-binding protein 5 isoform X1 | ||||
TrEMBL | A0A2K3NS16 | 0.0 | A0A2K3NS16_TRIPR; Telomere repeat-binding protein 5-like | ||||
STRING | XP_004492361.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 4e-92 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1722 |