PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1721
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 616aa    MW: 68786.8 Da    PI: 9.2618
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1721genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-08523572147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Tp57577_TGAC_v2_mRNA1721 523 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdnaKHRTYVDLKDKWKTL 572
                               567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.53E-6329412IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.75518577IPR017930Myb domain
SMARTSM007171.4E-7522575IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10523573IPR009057Homeodomain-like
CDDcd116601.93E-16524574No hitNo description
SuperFamilySSF466891.22E-15524605IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MVMQKRLDYG FNGYQVPSVP RASRSPRGRG TVRKKPESNQ IQAFDILASV AGNLLQKNQS  60
SILDNASSAK DPRTFSGINI KENKQENQLG SLKEEQFEPG TCSEVVSGSV PSLQEKHENQ  120
RVTSDSSLHG NHLEGQGQNE LERDDERVKL QNTNEKIIRI KNRSDGSIEQ GQKASKDCSA  180
ENHAEKPSPE GHCRRNLDSL PNGFGSRKLV NRDDDENFVQ CTQLNSKNKI SSDPPPDTLK  240
VKDASPFVKD ENNSGDNSVL ENSERMYPFK KRKFYYQTSS STSDSWSHCQ GTVDSSYTRV  300
NGTNHGAGAT MHVIEESSSI ADEQVHPGSK GCNVKLSIKS FKVPELFIDI PETATIGSLK  360
RTVMEAVTAI LGDELHVGIL LQGKKVRDDS KTLIQTGISQ DDKHHRLGFM LEPRHNRISS  420
SYNEEPCFLT TNSRQKLSRQ STSLMLQQGT YNVSRERSTV KIENCAEGDH NAVSSLGDTS  480
ANNNNMSKCR ALVTVPAINM DALAVVPYRR KSGNSDFGQR RIRRPFSVLE VEALVQAVEK  540
LGTGRWRDVK QRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH  600
AYWSQQQCKH QLKSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-555076151109Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448864.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024625720.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_024625721.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-102TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2K3NS160.0A0A2K3NS16_TRIPR; Telomere repeat-binding protein 5-like
STRINGXP_004492361.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-93TRF-like 2