PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YA | ||||||||
Protein Properties | Length: 154aa MW: 16808.7 Da PI: 6.622 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 42.8 | 1.7e-13 | 34 | 57 | 35 | 58 |
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh hAl+R+RgsgGrF Tp57577_TGAC_v2_mRNA17007 34 LQPYLHESRHLHALKRARGSGGRF 57 58*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 16.75 | 1 | 60 | IPR001289 | Nuclear transcription factor Y subunit A |
SMART | SM00521 | 2.3E-5 | 9 | 60 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-10 | 34 | 57 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
LNVVENNESE SKCTFLFPFP LSKITLNNIL NIVLQPYLHE SRHLHALKRA RGSGGRFLNT 60 KKLQDHGLSI SAATRLNPSG YVPELKVHQV ENYRDGASTT TCSEVTSASN SDDMFQQDES 120 DFKSCDYPSH MQGFSTDTGG GGGGNQSHMS ILM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510428.1 | 5e-60 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_004510429.1 | 4e-60 | nuclear transcription factor Y subunit A-3 isoform X2 | ||||
TrEMBL | A0A1S2YV67 | 1e-58 | A0A1S2YV67_CICAR; nuclear transcription factor Y subunit A-3 isoform X1 | ||||
TrEMBL | A0A1S2YV74 | 9e-59 | A0A1S2YV74_CICAR; nuclear transcription factor Y subunit A-3 isoform X2 | ||||
STRING | XP_004510428.1 | 2e-59 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10120 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.3 | 6e-21 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17007 |