PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G72830.3 | ||||||||
Common Name | ATHAP2C, HAP2C, NF-YA3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YA | ||||||||
Protein Properties | Length: 315aa MW: 34954.8 Da PI: 10.2794 | ||||||||
Description | nuclear factor Y, subunit A3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 84.1 | 2.2e-26 | 161 | 209 | 9 | 58 |
CBFB_NFYA 9 KQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 Qy++I++RRq+Rakle+++kl +++rkpylheSRh hAl+RpRgsgGrF AT1G72830.3 161 MQYHAIMRRRQQRAKLEAQNKL-IRARKPYLHESRHVHALKRPRGSGGRF 209 5*********************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.4E-29 | 151 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.949 | 152 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-18 | 155 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.9E-21 | 161 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-18 | 186 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007131 | developmental stage | seedling development stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ 60 ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG SEITQRKGFA SNPKQGSMTG 120 FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MQYHAIMRRR QQRAKLEAQN 180 KLIRARKPYL HESRHVHALK RPRGSGGRFL NTKKLLQESE QAAAREQEQD KLGQQVNRKT 240 NMSRFEAHML QNNKDRSSTT SGSDITSVSD GADIFGHTEF QFSGFPTPIN RAMLVHGQSN 300 DMHGGGDMHH FSVHI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-14 | 162 | 213 | 11 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.82 | 0.0 | leaf| seed| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 262378_at | 0.0 | ||||
Expression Atlas | AT1G72830 | - | ||||
AtGenExpress | AT1G72830 | - | ||||
ATTED-II | AT1G72830 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G72830.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G72830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057539 | 0.0 | AY057539.1 Arabidopsis thaliana At1g72830/F3N23_3 mRNA, complete cds. | |||
GenBank | AY140028 | 0.0 | AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds. | |||
GenBank | BT008825 | 0.0 | BT008825.1 Arabidopsis thaliana At1g72830 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001031272.1 | 0.0 | nuclear factor Y, subunit A3 | ||||
Swissprot | Q93ZH2 | 0.0 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | F4IEZ4 | 0.0 | F4IEZ4_ARATH; Nuclear factor Y, subunit A3 | ||||
STRING | AT1G72830.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G72830.3 |
Entrez Gene | 843614 |
iHOP | AT1G72830 |
wikigenes | AT1G72830 |