PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16835
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 609aa    MW: 70731.4 Da    PI: 8.0566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16835genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-09399443148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                r +WT++E e + +  +q+G++ W++Ia  +g  +++ q+k+ w+ ++
  Tp57577_TGAC_v2_mRNA16835 399 RCKWTPDELEFIRKSYEQHGPD-WRLIADALG--KSRDQVKDVWRRLK 443
                                679*****************88.********8..8*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-5324395IPR009057Homeodomain-like
SMARTSM007179.5E-4325396IPR001005SANT/Myb domain
PROSITE profilePS500903.915328389IPR017877Myb-like domain
PROSITE profilePS5129413.12394447IPR017930Myb domain
SMARTSM007171.3E-7398445IPR001005SANT/Myb domain
SuperFamilySSF466897.33E-10400460IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-8401455IPR009057Homeodomain-like
CDDcd001676.11E-5401443No hitNo description
PfamPF139213.8E-11402460No hitNo description
PROSITE profilePS500906.504444513IPR017877Myb-like domain
SMARTSM007170.75448515IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4456512IPR009057Homeodomain-like
PROSITE profilePS500907.515515568IPR017877Myb-like domain
SMARTSM0071753519570IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
LIVVEQSSNA DSNNGDSGVY SAVIGGEGHI TKMETPSKKN KRTEDKEGET NRGDSYMSES  60
NAVDDLPLAK SNYNQHLVES NKSEDGKQGK KKNKKKKPSE ESKDKEYKEL KSNECEDHNQ  120
GKQIKKKQML IEGNTPKECN DFRSNVDEDG KQYKKVKKKK KKLSEERKHK EFESNGCEDD  180
NQGKKMKKKH KLIEGNTLKE CNEFGSNGGE DGEQDKKMKK NKKKLSEESK HKERNEFKSN  240
ECEDDEGKKM KKKRKLMEGN TLNESNDSRS NECEDGEQDK KMKKKKLSEE SKHKESSKFK  300
NNDGKPKRVT FSDEVETFCC DGLVRGKRFT PEEDETLKAS VFAYIDSHGL GEEGLDKVLH  360
AASHSEVRGC WKEIARALPH RPHYSVYKRA HALLENVGRC KWTPDELEFI RKSYEQHGPD  420
WRLIADALGK SRDQVKDVWR RLKYEKARFG HWSQEEYQTL FNLVNMDLRT RSLEPYRKSQ  480
HGMLRDNICW EAIGHKLETR NSAYCCKKWY EELTSIMVTR GEWCDTDDFR LIDALYTLDA  540
CCMEEVEWDE LLEHRSGDAC RKRWDQMVQH LGVHARKPFM EQVEVLTKRF CPDLLEARET  600
FDNKPVIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161KKVKKKKKK
2155162VKKKKKKL
3250255KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16835
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499688.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A2K3M9W80.0A0A2K3M9W8_TRIPR; Cyclin-d-binding MYB-like protein transcription factor 1-like protein
STRINGXP_004499688.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-109MYB_related family protein