PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1670
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 390aa    MW: 44408.6 Da    PI: 8.2636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1670genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151477148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT................TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg................kgRtlkqcksrwqkyl 48
                              +g W++eEde+l+++++++G g+W+++++  g                + R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA1670 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGilygtnymtiiiymsgLQRCGKSCRLRWINYL 77
                              678***********************************************************97 PP
2Myb_DNA-binding43.28.9e-1483126146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+++++E+  +++++++lG++ W+ Ia+ ++ gRt++++k+ w++
  Tp57577_TGAC_v2_mRNA1670  83 RGAFSQQEENSIIELHALLGNR-WSQIAAQLP-GRTDNEIKNLWNS 126
                               89********************.*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-26680IPR009057Homeodomain-like
PROSITE profilePS5129414.138977IPR017930Myb domain
SuperFamilySSF466894.58E-2612124IPR009057Homeodomain-like
SMARTSM007173.8E-101379IPR001005SANT/Myb domain
PfamPF002498.8E-141477IPR001005SANT/Myb domain
CDDcd001671.93E-91777No hitNo description
PROSITE profilePS5129423.69778132IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2581132IPR009057Homeodomain-like
SMARTSM007174.5E-1282130IPR001005SANT/Myb domain
PfamPF002497.1E-1383126IPR001005SANT/Myb domain
CDDcd001672.74E-885128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGILYGT NYMTIIIYMS  60
GLQRCGKSCR LRWINYLRPD LKRGAFSQQE ENSIIELHAL LGNRWSQIAA QLPGRTDNEI  120
KNLWNSSLKK KLRQKGIDPN THQPLCELAE INDKDKQXXX XXKINNCFIP SSDHMVGLGG  180
SYLSFQQLNY GINNIALSPN SNNNNNNSLC FIPSTSGSNS TCSQMMSELN SSTMYHSMFQ  240
TAPNTKHINP SNSISSGDVD GIQNWEFGNN NASKSSNGSS CSNINFIDHE DIKWSEYLNS  300
TTPFFQQQHQ SSIIYNDNEV KQEMGFINNR DESSSTTIWN NSNSHHQQHF EVFFTFVYLP  360
QLPRRFNLFL SILVFTVQLL VQFFTTVTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121325108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311868e-75KT031186.1 Glycine max clone HN_CCL_14 MYB/HD-like transcription factor (Glyma03g38660.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626126.11e-134transcription factor MYB61
SwissprotQ8VZQ22e-89MYB61_ARATH; Transcription factor MYB61
TrEMBLQ2HRU11e-133Q2HRU1_MEDTR; Homeodomain-related
STRINGAES823441e-133(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108333103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-79myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]