PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16537
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 273aa    MW: 30668 Da    PI: 5.1771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1857110356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++  +q+++Le+ Fe ++++  e++e+LA +lgL+ rqV vWFqNrRa++k
  Tp57577_TGAC_v2_mRNA16537  57 KKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWK 110
                                45578899*********************************************9 PP
2HD-ZIP_I/II1246.9e-4056148193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl  +qvk+LE++Fe e+kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + +++ +++
  Tp57577_TGAC_v2_mRNA16537  56 EKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKYDAIGQDN 139
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                ++L++e+ke
  Tp57577_TGAC_v2_mRNA16537 140 KALNKEIKE 148
                                ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1936114IPR009057Homeodomain-like
PROSITE profilePS5007117.03852112IPR001356Homeobox domain
SMARTSM003891.1E-1655116IPR001356Homeobox domain
CDDcd000868.43E-1657113No hitNo description
PfamPF000466.2E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1964111IPR009057Homeodomain-like
PRINTSPR000311.5E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.5E-592108IPR000047Helix-turn-helix motif
PfamPF021838.1E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKRLSTSDSS NPLITISPST EEQSPRNKHV YGMEFQSMML DGFEEGCGEE TGHHSEKKRR  60
LRVDQVKALE KNFEVENKLE PERKEKLAIE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYDALKL KYDAIGQDNK ALNKEIKELK SKLEEGEKSS SSVLVKEEIM MLESDEEKHN  180
PSSETSIPSS ESKDHLNYDC IINNNDIGIG EASSLFPVDL KDGSSDSDSS AISSSGVLRG  240
HLLLSPDSSS XXXXXXXXXS SEDGRAEFLK CR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0523850.0BT052385.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-K-20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601919.11e-143homeobox-leucine zipper protein ATHB-6
SwissprotQ940J11e-58ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A2Z6P8Z61e-157A0A2Z6P8Z6_TRISU; Uncharacterized protein
STRINGAES721701e-143(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-56homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]