PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 334aa MW: 39174 Da PI: 4.7582 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.9 | 2.6e-13 | 182 | 220 | 6 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +s+r tf kR+ g++ K +ELS+LC++e++ ii+ +++ Tp57577_TGAC_v2_mRNA16398 182 NSKRRETFRKRKSGLMNKVNELSTLCGIEACAIIYDQNN 220 678889****************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-17 | 169 | 228 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.11 | 169 | 220 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-22 | 171 | 262 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-7 | 171 | 191 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.29E-25 | 171 | 253 | No hit | No description |
Pfam | PF00319 | 7.2E-14 | 179 | 220 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-7 | 191 | 206 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-7 | 206 | 227 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAVQWDQDAR YKILETIIEL SQDNNRPIEE AFELFSDFIN RPRRHSSFME KWIEFVEEIS 60 EEDFEAQDRE SIDSVTTQIE QDSKVYTMED FRKAKVHMDD EEPSQTKETD ATNFERFKET 120 LKELEDECIS ISEEVSAILR RKPQPKRDDA KSLPLPCSIG EKEGETCIYN RKKVKLAYIT 180 CNSKRRETFR KRKSGLMNKV NELSTLCGIE ACAIIYDQNN PQAEVWPSDS GVKRVLSRFG 240 SLSELERSKK KVDQEVFLRE SIEKSCDQLN KKMEENRKKE MANIIDHFIH NGEFNSHLMS 300 KDDLNVFSSF IDENYLKEIN QKMKEMQIET QDP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 192 | RKKVKLAYITCNSKRRETFRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16398 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3P5C8 | 1e-109 | A0A2K3P5C8_TRIPR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16291 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-30 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16398 |