PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16266
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 383aa    MW: 43756.1 Da    PI: 7.3115
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16266genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.6e-32155208255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Tp57577_TGAC_v2_mRNA16266 155 PRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 208
                                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15152208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-28153208IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23155208IPR006447Myb domain, plants
PfamPF002492.7E-7156207IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MFTTNSSHPT IMQTLFSPLL EPDLSLNISP PSISDSEVKE MKNYDKGLST KALYNDNICS  60
ISTSDSASSE SELSHENPFI YHHQHVHHHE PTLRLGFGNS DLMNPHHHNH HLHRHQVQDV  120
SRNFNHQHFQ PHIYGRDFKR NTRVVNGVKR SVRAPRMRWT TTLHSHFVHA VQLLGGHERA  180
TPKSVLELMN VKDLTLAHVK SHLQMYRTVK TTDKSGAGHG MVQTQGINNI VPLHGANSCE  240
RPNLPQDRTC WQPSKETNTN NTSEKSEIGL MYSHFKENDT MVKRLDSTQL SHSNSMIDLE  300
FTLGRPNWEK DQAESSRELA FLKPNRVHLG PYIGHVGHVL CHTFFHNIVL IIYVMFQEDL  360
IFEQWRICDG SNTLEGCDDV NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-17156210458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579781e-106AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589289.11e-159probable transcription factor KAN4
SwissprotQ9FJV51e-57KAN4_ARATH; Probable transcription factor KAN4
TrEMBLG7I5881e-158G7I588_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGAES595401e-159(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-60G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]