PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15681
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 299aa    MW: 34466.5 Da    PI: 6.3137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15681genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141269148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48
                               +g+WT eEd+ll++ ++ +G g+W+  a   g          ++Rt+k+c++rw++yl
  Tp57577_TGAC_v2_mRNA15681 12 KGPWTLEEDDLLIKHIANHGEGRWNFLAMSSGkklfasarcgLRRTGKSCRLRWLNYL 69
                               79******************************************************97 PP
2Myb_DNA-binding47.73.5e-1575118146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T eE +l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA15681  75 RGNLTLEEKLLIFELHSKWGNK-WSKIAQNLP-GRTDNEIKNYWRT 118
                                7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-20672IPR009057Homeodomain-like
PROSITE profilePS5129414.593769IPR017930Myb domain
SuperFamilySSF466891.36E-2710116IPR009057Homeodomain-like
SMARTSM007171.4E-121171IPR001005SANT/Myb domain
PfamPF002493.4E-131269IPR001005SANT/Myb domain
CDDcd001673.08E-91469No hitNo description
PROSITE profilePS5129423.99770124IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2273123IPR009057Homeodomain-like
SMARTSM007173.4E-1374122IPR001005SANT/Myb domain
PfamPF002491.1E-1375118IPR001005SANT/Myb domain
CDDcd001673.87E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSNSKDDNEL RKGPWTLEED DLLIKHIANH GEGRWNFLAM SSGKKLFASA RCGLRRTGKS  60
CRLRWLNYLN PNIKRGNLTL EEKLLIFELH SKWGNKWSKI AQNLPGRTDN EIKNYWRTRI  120
QKQARHLKVD TNGRGFLEIV NPLRITSHQK SKESFSSTIQ DQSIPLPLDG VSHYSSIETI  180
QTQVPYLDHY EINSDSEQNN GLCMSSSEST NMPNITQPLE YTTSQFQSLD NNEYDICSYD  240
GYHINNNSLN LKSTMVAEDL EYQMGDFNIL ESNWLDKEFA CTSTWDLNEL LQVRSTQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-26912424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15681
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512906.11e-129transcription factor MYB21-like
SwissprotQ9C9G73e-58MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S2Z0L51e-128A0A1S2Z0L5_CICAR; transcription factor MYB21-like
STRINGXP_004512906.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-60myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]